Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq45842 111 2e-19 seq1240 82.4 8e-11 >seq45842 Length=221613 Score = 111 bits (122), Expect = 2e-19 Identities = 129/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 21861 CCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAA 21920 |||||||||||||||| ||||||||||| || |||||||| || | |||| | ||| | Sbjct 81552 CCAAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGATATGA 81611 Query 21921 AATATCGTTCGTTATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTT 21980 ||| ||| || | |||| | | |||| ||||| |||||||||||| ||||| |||| Sbjct 81612 AATGTCGCTCTTCATCTTTCAGGTTTTCCCAATGCCCTAAATCTTTTGACAAATCAACTT 81671 Query 21981 CTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCAGATATCAT 22034 | || | ||||| ||| || || || || ||||| |||||| |||| Sbjct 81672 CCTCTGCAGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATCTGCCAGATGTCAT 81725 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/158 (75%), Gaps = 5/158 (3%) Strand=Plus/Plus Query 21125 ATTTAAAAATCAGCATCTAATGAGAAAACAT---TATCTTCtttttttGACATAATTCCC 21181 ||||| ||||| ||||| |||| || || |||| | | |||||| | ||| Sbjct 76752 ATTTAGAAATCGGCATCCAATGTAAATGAATGGGTATCACCACCTCCTGACATTACACCC 76811 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || || ||||| || | |||||| || || ||||| |||||||||||||| |||||||| Sbjct 76812 ATCTTCTGATATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTTCCTTCTAATGATATC 76871 Query 21242 GATTCCATAAAATCAAATGGATTTTC-AGATT-TAAAT 21277 |||||| || ||||| |||||||| | ||| ||||| Sbjct 76872 TGTTCCATGAAGTCAAAAGGATTTTCTACATTGTAAAT 76909 >seq1240 Length=244183 Score = 82.4 bits (90), Expect = 8e-11 Identities = 200/295 (68%), Gaps = 11/295 (4%) Strand=Plus/Plus Query 132557 TCAATATTTTTAATGGGATGTTATGATTCAGATCGTATGA--TTTGGAAGACTGTAACAA 132614 || |||||||| ||||| ||||||| || || | || ||| | | ||||||||| Sbjct 100138 TCCATATTTTTGTTGGGAGCTTATGATCCACATACAAAGAAATTTTGTA--CTGTAACAA 100195 Query 132615 AATGT---TCTGGTCATGACGATAAAACGCTTCAACAATTGCAAGAAGATATGGAATTAA 132671 ||||| ||| |||||| || | || | |||| ||| ||| | || | | Sbjct 100196 AATGTGGCAGTGGATTTGACGACAAGAGACTGGAGGAATTACAAACAGAACTCGATGTCA 100255 Query 132672 TAAAAATAAGCCGCGAACCTGATAAAATTCCAAAATGGTTATCCGTTAATAAAATATATT 132731 |||||||||| || | |||| | |||| |||||| | |||| ||| || || Sbjct 100256 TAAAAATAAGTAAAGATCAGTCTAAAGTCCCAAGCTGGTTAAACATTAA-AAAGCATCTT 100314 Query 132732 -ATCCTGATTTTGTAGTGAAGGATCC-TAGATCGGCACCCGTTTGGGAAATTGTGGGATC 132789 ||| || ||||| || | ||||| |||| || || |||||||||| ||||| | Sbjct 100315 GTTCCAGACTTTGTCGTCAGAGATCCAAAGAT-TGCTCCGATTTGGGAAATAATGGGAGC 100373 Query 132790 CGGATTTACAAAATCCCAATATCATACTGCCGATGGAATTTCTATCAGATTTCCA 132844 | ||||| ||| | || |||||| || ||||| || || || ||||||||| Sbjct 100374 AGAATTTAGTAAAGCAGAAGTTCATACGGCTGATGGGATATCCATAAGATTTCCA 100428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531464229120880