Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq45842 122 1e-22 seq63864 105 8e-18 >seq45842 Length=221613 Score = 122 bits (134), Expect = 1e-22 Identities = 163/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||||||| || || || ||| || || || || ||||| | || | || | Sbjct 80242 CCTCATCTCTACTGATAAGCTCATTGCTGAAAGTAAGACCAGGCATAATTCCTCTTTTCT 80301 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| || || | || || ||||| || || |||||||||||||| ||||| | Sbjct 80302 TCAGCCAGAAAATAGCTGCAAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAAAG 80361 Query 33446 CAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGG 33502 | | || ||||||| |||| | || || |||| ||||| || |||||||| | Sbjct 80362 CTACAACTCTCTCTGCATATGCTGCATTACTTTCATTGATCCATTTAATGGCCCAATCTG 80421 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 |||| | ||||||||| ||||| || || || |||||||| ||||| Sbjct 80422 CCTTTTCTTTTACACATGGCATTGTCTCAATAGCATTAAACAGATA 80467 Score = 111 bits (122), Expect = 2e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 33686 CCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33745 |||| |||||||| || ||||| ||||| ||||||||||| || | | |||| ||| | Sbjct 81552 CCAAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGATATGA 81611 Query 33746 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTT 33805 ||| | || || | | || || | ||||| | |||||| || | ||| |||| Sbjct 81612 AATGTCGCTCTTCATCTTTCAGGTTTTCCCAATGCCCTAAATCTTTTGACAAATCAACTT 81671 Query 33806 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATT 33865 | || | ||||| || || || ||||| || || ||||| | ||||||||||| || | Sbjct 81672 CCTCTGCAGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATCTGCCAGATGTCATGGTACT 81731 Query 33866 GGATTGGGAAAATAACAAATC 33886 | || ||||| | |||||||| Sbjct 81732 GAATGGGGAAGACAACAAATC 81752 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 33565 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33624 ||||| | || ||||| || | | ||||||||||| ||||||||||| || ||||| Sbjct 80941 TCTTTGATGTAGGTATCAATGAGTAAGCTATACATTTCAGAATGAATGTTCTCCATGGCA 81000 Query 33625 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668 ||||| || || || |||||||| || || ||| ||||||||| Sbjct 81001 ATCTGGAAACCATAAAAACATCTGGCTTCTGTAGCCTGTACTTC 81044 >seq63864 Length=1411193 Score = 105 bits (116), Expect = 8e-18 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 63138 TCGAACTCGTCTCCCCAAACATTGT-CCAATCCAGGACATTCATCCGGACACATCAACGA 63196 || || || |||||||| || | | ||| |||||||||||||| || |||| ||| | Sbjct 1069200 TCAAATTCCTCTCCCCAG-CAGTCTGCCAGTCCAGGACATTCATGTGGGCACAGCAAGGT 1069258 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63255 ||||||||| | || || |||||||| || | || |||||||| | ||| ||| | Sbjct 1069259 CCACTCTCCATTGCTCTCTACACGTTTCATGAACAAGTCTGGAATCCACATAGC-ATAGA 1069317 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 | ||||| |||| |||| ||| || || ||||| || || || || | ||| | | Sbjct 1069318 ACAGATCCCTGGCTCTAGATTCTTCTTTACCTGTGTTTTTCTTGCAGTCTAAGAAATCAA 1069377 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 ||||||| |||||| ||||||| ||| || || Sbjct 1069378 ATATATCAGCATGCCATGGTTCCAGGTACATAGC 1069411 Score = 100 bits (110), Expect = 4e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||| || ||||| || ||||||||||| | |||||| || ||||| || || | || | Sbjct 1055906 TACCTGGAATTCACCTGACAATACTCTTCTAGTGTAGATGTTACTTGTGTAGGCCTCTAT 1055965 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 ||||| |||||||| | |||||||| || || || || |||||||| || | |||||| Sbjct 1055966 AGACTCGTTATTTCCAAGGATTTGAGCTGTGGAAGCTGTAGGCATAGGAGCTAACAATAA 1056025 Query 62456 ACTATTTCTAAGACC 62470 || ||||| | ||| Sbjct 1056026 GCTGTTTCTTATACC 1056040 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 62568 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62627 |||||| | || || ||||| || || ||||| || | ||||||||||| |||| Sbjct 1063028 GATCCTTCGTAGGTCTCGTAGGGGCCCAATTTCTCTGCCAACTCACAACTCGCTTCTAGA 1063087 Query 62628 GCACCGTAATAAATGGTTTCGAAGATCTTCT-TATTTAGATC-TTGTGCTTCCAGGCTAT 62685 ||| | ||||| || || || || || |||| | |||| ||| ||| || ||| || | Sbjct 1063088 GCAGCATAATACATAGTGTCAAATAT-TTCTCTGTTTA-ATCTTTGGGCCTCCTCACTCT 1063145 Query 62686 CAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAG 62745 ||||||| | | | | ||| || || || || | |||||| || |||||||| |||| Sbjct 1063146 CAAATGGGAATCTCATCAAAATGAAGGCATCAGCAAGTCCTTGGACTCCAATACCAATAG 1063205 Query 62746 GTCTATGTCTCTTATTAGAGATTTCAGC 62773 |||| |||| | | || || ||| ||| Sbjct 1063206 GTCTGTGTCGCATGTTGGACCTTTTAGC 1063233 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62936 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 62995 ||||| || ||||| || || || |||||||| || || ||||| | |||||||||||| Sbjct 1067856 ATATTCTACAATCTCTGTACACAGGTTACTACATTTAATGGTTCCCAGATTTTGTTGATT 1067915 Query 62996 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63055 ||| |||||| ||| || || | ||| | |||||||||||||| | || || Sbjct 1067916 TGACTTGCGGTTACAGTGATCTTTGTATAACATGTAAGGAGTACCAGTTTCTGTTTGTGA 1067975 Query 63056 TTCTATAATCGCTTTCCA 63073 ||| ||||| || | ||| Sbjct 1067976 TTCAATAATGGCGTACCA 1067993 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/102 (79%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 63582 AGAAAACAG--CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63639 |||||||| |||||||||||| |||||| |||||| ||||| || || || || || | Sbjct 1075673 AGAAAACAAACCTAGACATTTGGGGACGACAAGTTCCTGCATTGAACAATGTTGGTGATG 1075732 Query 63640 CGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA 63681 |||| ||||||||| |||| || || || || || |||| || Sbjct 1075733 CGTGTGTAAACCATCTTTCTGACAGCAGGTTATATGTCTGAA 1075774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622435900511920