Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq63207 140 3e-28 seq13065 104 2e-17 seq38782 86.0 6e-12 >seq63207 Length=555540 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| || || || ||| | ||||| | || ||||| || Sbjct 379344 ATGCAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCA 379285 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||| | || || | |||||| |||||| ||||||||||| || ||||| ||||| Sbjct 379284 GACTCAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 379225 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| || || |||||||| ||||||| |||| | || ||||||||| Sbjct 379224 CAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCAGACTATAAC 379165 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || || | ||||| || || | ||||||||||| Sbjct 379164 ATTCAGAAGGAGTCAACACTTCATCTTGTACTCCGTCTTAGAGGAGG 379118 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | |||||||| || | ||||| ||| | ||||| | || | ||| | Sbjct 322227 ATGCAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCACTTTAGAGGTGGAACCTTCT 322168 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | |||||| |||||| ||||||||||| || || || ||||| Sbjct 322167 GATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAG 322108 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| || || |||||||| ||||||| ||||| | || ||||| ||| Sbjct 322107 CAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGTAGAACCCTCTCGGACTACAAC 322048 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||| || || || | ||||| || || | ||||||||||| Sbjct 322047 ATTCAAAAGGAGTCAACACTTCATCTTGTACTCCGTCTTAGAGGAGG 322001 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| || || || ||| | ||||| | || ||||| || Sbjct 379116 ATGCAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCA 379057 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| |||||| ||||||||||| || ||||| ||||| Sbjct 379056 GACACAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 378997 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| || || |||||||| ||||||| |||| || ||||| ||| Sbjct 378996 CAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACGCTCTCTGACTACAAC 378937 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || || | ||||| || || | ||||||||||| Sbjct 378936 ATTCAGAAGGAGTCAACACTTCATCTTGTACTCCGTCTTAGAGGAGG 378890 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | |||||||| || | ||||| ||| | ||||| | || | ||| | Sbjct 379573 AATGCAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCACTTTGGAGGTGGAACCTTC 379514 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || |||||||| | |||||| |||||| ||||||||||| || ||||| ||||| Sbjct 379513 TGATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCA 379454 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 |||||| | |||| || || |||||||| ||||||| |||| | || ||||| || Sbjct 379453 GCAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCAGACTACAA 379394 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||| || || || || | ||||| || || | ||||||||||| Sbjct 379393 CATTCAGAAGGAGTCGACACTTCATCTTGTACTCCGTCTTAGAGGAGG 379346 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| ||||| || || || ||| | ||||| | || ||||| || Sbjct 378888 ATGCAAATATTTGTCAAAACTTTGACAGGTAAAACTATCACACTTGAGGTAGAACCATCA 378829 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| |||||| ||||||||||| || || || ||||| Sbjct 378828 GACACAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAG 378769 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| | || |||||||| ||||||| || | | || ||||||||| Sbjct 378768 CAAAGATTGATTTTTGCTGGTAAACAACTTGAAGATGGAAGGACCCTCTCAGACTATAAC 378709 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 ||||| || || || || | ||||| || ||| Sbjct 378708 ATTCAGAAGGAGTCAACACTTCATCTTGTACTG 378676 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26786 AACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGT 26845 ||| || || || ||| | ||||| | || ||||| || ||| | || || | || Sbjct 321967 AACGTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCAGACGCAATTGAAAATGT 321908 Query 26846 CAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGG 26905 |||| ||| || || |||||||| || || || ||||| |||||| | |||| || Sbjct 321907 CAAATCTAAGCTTCAAGATAAAGAAGGAATCCCACCAGATCAGCAAAGATTGATTTTCGC 321848 Query 26906 CGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTAC 26965 || |||||||| ||||||| ||||| | || |||||||||||||| || || || || Sbjct 321847 TGGTAAACAACTTGAAGATGGTAGAACCCTCTCAGACTATAACATTCAGAAGGAGTCGAC 321788 Query 26966 TATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | ||||| || || |||| |||||| Sbjct 321787 ACTTCATCTTGTACTACATCTTACAGGAGG 321758 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/213 (69%), Gaps = 3/213 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||| | ||||| || || || ||| | ||||| | | ||||| || Sbjct 321756 ATGCAAATATTTATCAAAACTTTGACCGGTAAAACTATCACACTTGCGGTAGAACCAGCA 321697 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| |||||| ||||||||||| || || | ||||| Sbjct 321696 GACACAATTGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCATCAGATCAG 321637 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | ||| || || || ||||| || ||| ||| | || ||||||||| Sbjct 321636 CAAAGATTGCTTTTCGCTGGTAAGCAACTTCAATATG---GAATCCTCTCGGACTATAAC 321580 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 ||||| || || || | | ||||| || ||| Sbjct 321579 ATTCAGAAGGAGTCGATACTTCATCTTGTACTG 321547 >seq13065 Length=295510 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || |||||| | |||||||| | || || | || | ||| || Sbjct 164090 ATGCAAATTTTCGTGAAAACACTTACTGGAAAGACAATTACACTTGAGGTTGAACCATCA 164149 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || || ||||| ||||||||||| || || || ||||| Sbjct 164150 GACACCATTGAAAATGTAAAGGCTAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 164209 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ACGTCAGCGACTATA 26946 ||| | ||||| | | ||| |||||||| ||||||| | | |||| ||||| | Sbjct 164210 CAACGTCTCATCTTTGCCGGTAAACAACTTGAAGATGGCCGTACTTTGTCA--GACTACA 164267 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAAAA 26999 ||||||| |||||||| || ||||| | ||| || | | ||||||||| || Sbjct 164268 ACATTCAGAAAGAATCGACCCTCCATTTAGTCTTGCGTTTGAGAGGAGGACAA 164320 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| |||||| | || ||||| | ||||| | || | ||| | Sbjct 163634 ATGCAGATCTTTGTGAAAACACTCACAGGAAAGACCATCACTTTGGAGGTTGAACCTTCA 163693 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | || || || || ||||||||||| || || || ||||| Sbjct 163694 GACACCATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGAATTCCCCCAGATCAG 163753 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ACGTCAGCGACTATA 26946 ||| | ||||| | | ||| || ||||| ||||||| | | |||| ||||| | Sbjct 163754 CAACGTCTCATCTTTGCCGGTAAGCAACTTGAAGATGGCCGTACTTTGTCA--GACTACA 163811 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | ||||| |||||||| || ||||| | ||| || | | |||||||| Sbjct 163812 ATATTCAGAAAGAATCAACCCTCCATTTAGTCTTGCGTTTGAGAGGAGG 163860 >seq38782 Length=914567 Score = 86.0 bits (94), Expect = 6e-12 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 71744 ATGTACTGGGCCAAAAAGATTCTCGAGTGGAC-TCAAACTCCCGAGCAGGCGCTCGAGTA 71802 ||||||||||| || || ||| | |||||||| |||||| | || |||| | || Sbjct 665214 ATGTACTGGGCAAAGAAAATTTTAGAGTGGACATCAAACCCGACAG-AGGCATTAGAAAC 665156 Query 71803 TTCTATTTATCTAAACGATAGATACAGTCTCGACGGTCGCGATCCTAACGGTTATGTCGG 71862 | |||||||||| || |||||||| ||| | |||||| | |||||||| || ||||| || Sbjct 665155 TGCTATTTATCTGAATGATAGATATAGTTTAGACGGTAGAGATCCTAATGGCTATGTTGG 665096 Query 71863 T 71863 | Sbjct 665095 T 665095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478269525868640