Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq63864 89.7 1e-12 seq45842 84.2 6e-11 >seq63864 Length=1411193 Score = 89.7 bits (98), Expect = 1e-12 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Minus Query 363837 AGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCT 363896 |||||| ||||||||||| || || || ||||| ||||| ||||| |||||| || Sbjct 1069421 AGGGGCTTTTGCTATGTACCTGGAACCATGGCATGCTGATATATTTGA-TTTCTTAGACT 1069363 Query 363897 CCG-GAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGG 363955 | ||||||||| || ||||| |||| | || | |||||||||||||| | ||| Sbjct 1069362 GCAAGAAAAACACAGGTAAAGAAGAATCTAGAGCCAGGGATCTGTTCTATGCTATGTGGA 1069303 Query 363956 TTTCTGACCATTTTATGAAGCGCGTGGAG-GCAGGTAAGAATTGGTCACTCTTTTGCCCA 364014 || | ||| || ||||| || || ||| ||| || | ||| | | | |||||| Sbjct 1069302 TTCCAGACTTGTTCATGAAACGTGTAGAGAGCAATGGAG-AGTGGACCTTGCTGTGCCCA 1069244 Query 364015 CACGAATGTCCAGGTCT 364031 || |||||||| || || Sbjct 1069243 CATGAATGTCCTGGACT 1069227 Score = 84.2 bits (92), Expect = 6e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 364096 CGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACA 364155 ||||| |||||| || || || |||||| ||||| || || || || | || || Sbjct 1068020 CGTAAAACAATTAAAGCTCAACAGTTATGGTACGCCATTATTGAATCACAAACAGAAACT 1067961 Query 364156 GGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTT 364215 || || || || ||||| ||||||||| || ||||||||||| || || || | || Sbjct 1067960 GGTACTCCTTACATGTTATACAAAGATCACTGTAACCGCAAGTCAAATCAACAAAATCTG 1067901 Query 364216 GGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATA 364259 || || ||| | || ||||| ||||| |||||| | ||||| Sbjct 1067900 GGAACCATTAAATGTAGTAACCTGTGTACAGAGATTGTAGAATA 1067857 >seq45842 Length=221613 Score = 84.2 bits (92), Expect = 6e-11 Identities = 141/197 (72%), Gaps = 18/197 (9%) Strand=Plus/Minus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGT------TCATTCGCG 22488 ||||| |||||||||||||| | |||||||| ||||||| || ||| || Sbjct 80430 AAGAA-AAGGCAGATTGGGCCATTAAATGGAT---CAATGAAAGTAATGCAGCATATGCA 80375 Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGG-AGCATTTTG-TG 22546 || | || | || ||||| | || ||||| ||||| || ||||| || ||||| | Sbjct 80374 GAGAGAGTTGTAGCTTTTGCAGCAGTAGAAGGAATTTTTTTCTCTGGTAG--TTTTGCAG 80317 Query 22547 CAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCA--AATGAGTT 22604 | || || ||||| || ||| | | ||||||||| ||||| || ||||| |||||| | Sbjct 80316 CTATTTTCTGGCTGAAGAAAAGAGGAATTATGCCTGGTCTTAC--TTTCAGCAATGAGCT 80259 Query 22605 AATTAGCCGAGATGAGG 22621 || || ||||||||| Sbjct 80258 TATCAGTAGAGATGAGG 80242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302257095947684