Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq45842 140 4e-28 seq63864 111 2e-19 >seq45842 Length=221613 Score = 140 bits (154), Expect = 4e-28 Identities = 167/226 (74%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | || ||| || || || || ||||| | || | || | Sbjct 80242 CCTCATCTCTACTGATAAGCTCATTGCTGAAAGTAAGACCAGGCATAATTCCTCTTTTCT 80301 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| || || | ||||| ||||| || ||||||||||||||||| ||||| | Sbjct 80302 TCAGCCAGAAAATAGCTGCAAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAAAG 80361 Query 32803 CAATAAGTCTCTCTCCATAACCGGC---GCTGTCATGTATCCACTTTTGAGCCCAATCGG 32859 | | || ||||||| |||| | || || |||| ||||| || |||||||| | Sbjct 80362 CTACAACTCTCTCTGCATATGCTGCATTACTTTCATTGATCCATTTAATGGCCCAATCTG 80421 Query 32860 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 |||| | ||||||||| ||||||||||| ||||||||||| ||||| Sbjct 80422 CCTTTTCTTTTACACATGGCATTGTCTCAATAGCATTAAACAGATA 80467 Score = 111 bits (122), Expect = 2e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 33045 AAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 33104 || |||||||| || ||||| ||||| ||||||||||| || | | |||| ||| ||| Sbjct 81554 AAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGATATGAAA 81613 Query 33105 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 33164 | | || || | | || || | ||||| | |||||| || | ||| ||||| Sbjct 81614 TGTCGCTCTTCATCTTTCAGGTTTTCCCAATGCCCTAAATCTTTTGACAAATCAACTTCC 81673 Query 33165 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGA 33224 || | ||||| || || || ||||| || || ||||| | |||||||||||| || ||| Sbjct 81674 TCTGCAGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATCTGCCAGATGTCATGGTACTGA 81733 Query 33225 ATTGGAAAAATAACAAATC 33243 || || || | |||||||| Sbjct 81734 ATGGGGAAGACAACAAATC 81752 Score = 82.4 bits (90), Expect = 1e-10 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414 ||||| || ||||| || || ||||| || || | || || ||||| || || || ||| Sbjct 76800 GACATTACACCCATCTTCTGATATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTTCCT 76859 Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAT 32464 ||||||||||| | ||||||||| || || ||||| ||||| ||||| Sbjct 76860 TCTAATGATATCTGTTCCATGAAGTCAAAAGGATTTTCTACATTGTAAAT 76909 >seq63864 Length=1411193 Score = 111 bits (122), Expect = 2e-19 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGT-CCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 || || || |||||||| || | | |||||||||||||||||| || |||| ||| | Sbjct 1069200 TCAAATTCCTCTCCCCAG-CAGTCTGCCAGTCCAGGACATTCATGTGGGCACAGCAAGGT 1069258 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63110 ||||||||| | || || |||||||| || | || |||||||| | ||| ||| | Sbjct 1069259 CCACTCTCCATTGCTCTCTACACGTTTCATGAACAAGTCTGGAATCCACATAGC-ATAGA 1069317 Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63170 | ||||| |||| |||| ||| || || ||||| || || || || | ||| | | Sbjct 1069318 ACAGATCCCTGGCTCTAGATTCTTCTTTACCTGTGTTTTTCTTGCAGTCTAAGAAATCAA 1069377 Query 63171 TAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 ||||||| |||||| ||||||| ||| || || Sbjct 1069378 ATATATCAGCATGCCATGGTTCCAGGTACATAGC 1069411 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||| || ||||| || ||||||||||| | |||||| || ||||| || || | || | Sbjct 1055906 TACCTGGAATTCACCTGACAATACTCTTCTAGTGTAGATGTTACTTGTGTAGGCCTCTAT 1055965 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 |||||| |||||||| | |||||||| || || || || |||||||| || | |||||| Sbjct 1055966 AGACTCGTTATTTCCAAGGATTTGAGCTGTGGAAGCTGTAGGCATAGGAGCTAACAATAA 1056025 Query 62311 ACTATTTCTAAGACC 62325 || ||||| | ||| Sbjct 1056026 GCTGTTTCTTATACC 1056040 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 62423 GATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAAT 62482 |||||| | || || ||||| || || ||||| || | ||||||||||| |||| Sbjct 1063028 GATCCTTCGTAGGTCTCGTAGGGGCCCAATTTCTCTGCCAACTCACAACTCGCTTCTAGA 1063087 Query 62483 GCACCGTAATAAATGGTTTCGAAGATCTTCT-TATTTAGATC-TTGCGCTTCCAGGCTAT 62540 ||| | ||||| || || || || || |||| | |||| ||| ||| || ||| || | Sbjct 1063088 GCAGCATAATACATAGTGTCAAATAT-TTCTCTGTTTA-ATCTTTGGGCCTCCTCACTCT 1063145 Query 62541 CAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAG 62600 ||||||| | | | | ||| || || || || | |||||| || |||||||| |||| Sbjct 1063146 CAAATGGGAATCTCATCAAAATGAAGGCATCAGCAAGTCCTTGGACTCCAATACCAATAG 1063205 Query 62601 GTCTATGTCTCTTATTAGAGATTTCAGC 62628 |||| |||| | | || || ||| ||| Sbjct 1063206 GTCTGTGTCGCATGTTGGACCTTTTAGC 1063233 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62791 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 62850 ||||| || ||||| || || || |||||||| || |||||||| | |||||||||||| Sbjct 1067856 ATATTCTACAATCTCTGTACACAGGTTACTACATTTAATGGTTCCCAGATTTTGTTGATT 1067915 Query 62851 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 62910 ||| |||||| ||| || || | ||| | |||||||||||||| | || || Sbjct 1067916 TGACTTGCGGTTACAGTGATCTTTGTATAACATGTAAGGAGTACCAGTTTCTGTTTGTGA 1067975 Query 62911 TTCTATAATCGCTTTCCA 62928 ||| ||||| || | ||| Sbjct 1067976 TTCAATAATGGCGTACCA 1067993 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/102 (79%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 63437 AGAAAACAG--CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 63494 |||||||| |||||||||||| |||||| |||||| ||||| || || || || || | Sbjct 1075673 AGAAAACAAACCTAGACATTTGGGGACGACAAGTTCCTGCATTGAACAATGTTGGTGATG 1075732 Query 63495 CGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAA 63536 |||| ||||||||| |||| || || || || || |||| || Sbjct 1075733 CGTGTGTAAACCATCTTTCTGACAGCAGGTTATATGTCTGAA 1075774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633111930695200