Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq63207 118 9e-22 seq13065 107 2e-18 >seq63207 Length=555540 Score = 118 bits (130), Expect = 9e-22 Identities = 168/234 (72%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || ||||||||||| | || |||||| ||||||| | || ||||| | Sbjct 322230 ACGATGCAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCACTTTAGAGGTGGAACCT 322171 Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 ||||| || ||||| |||| |||| || | ||| ||||||||||| |||||||| Sbjct 322170 TCTGATACCATCGAAAATGTCA---AAGCCAAGATTCAA-GACAAAGAAGGAATTCCACC 322115 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || || || | | ||||| || || |||||| | ||||||| | | || | || Sbjct 322114 AGATCAGCAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGTAGAACCCTCTCGGA 322055 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| |||||||| || || || || ||| | || || | || |||||||| Sbjct 322054 CTACAACATTCAAAAGGAGTCAACACTTCATCTTGTACTCCGTCTTAGAGGAGG 322001 Score = 114 bits (126), Expect = 1e-20 Identities = 168/235 (71%), Gaps = 16/235 (7%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || ||||||||||||||| | |||||| | || || || | || Sbjct 379116 ATGCAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCA 379057 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| || | ||| ||||||||||| ||||| || || Sbjct 379056 GACACAATTGAAAACGTCA---AAGCCAAGATTCA-AGACAAAGAAGGAATTCCTCCAGA 379001 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGAT----GATCGCACTGTGGGCG 25170 || || | | ||||| || || |||||| | |||||| || ||| || | | Sbjct 379000 TCAGCAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACGCTCTCT----G 378945 Query 25171 ATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | ||||| ||||| || || || || || ||| | || || | || |||||||| Sbjct 378944 ACTACAACATTCAGAAGGAGTCAACACTTCATCTTGTACTCCGTCTTAGAGGAGG 378890 Score = 109 bits (120), Expect = 5e-19 Identities = 167/236 (71%), Gaps = 8/236 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || |||||||| |||||| | |||||| | || || || | || Sbjct 378888 ATGCAAATATTTGTCAAAACTTTGACAGGTAAAACTATCACACTTGAGGTAGAACCATCA 378829 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| || | ||| ||||||||||| |||||||| || Sbjct 378828 GACACAATTGAAAACGTCA---AAGCCAAGATTCAA-GACAAAGAAGGAATTCCACCAGA 378773 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || | | |||||||| || |||||| | ||||||| | || | || || Sbjct 378772 TCAGCAAAGATTGATTTTTGCTGGTAAACAACTTGAAGATGGAAGGACCCTCTCAGACTA 378713 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATT 25230 || ||||| || || || || || ||| | || || | || | || ||||||| Sbjct 378712 TAACATTCAGAAGGAGTCAACACTTCATCTTGTACTGCGTTTACGTGGTGGAAATT 378657 Score = 109 bits (120), Expect = 5e-19 Identities = 166/234 (71%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || ||||||||||| | || |||||| ||||||| | || ||||| | Sbjct 379575 ACAATGCAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCACTTTGGAGGTGGAACCT 379516 Query 25056 TCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 ||||| || ||||| |||| |||| || | ||| ||||||||||| ||||| || Sbjct 379515 TCTGATACCATCGAAAATGTCA---AAGCCAAGATTCAA-GACAAAGAAGGAATTCCTCC 379460 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || || || | | ||||| || || |||||| | ||||||| | || | || Sbjct 379459 AGATCAGCAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCAGA 379400 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| ||||| || || || || || ||| | || || | || |||||||| Sbjct 379399 CTACAACATTCAGAAGGAGTCGACACTTCATCTTGTACTCCGTCTTAGAGGAGG 379346 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || ||||||||||||||| | |||||| | || || || | || Sbjct 379344 ATGCAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCA 379285 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| | || || |||| |||| || | ||| ||||||||||| ||||| || || Sbjct 379284 GACTCAATTGAAAACGTCA---AAGCCAAGATTCA-AGACAAAGAAGGAATTCCTCCAGA 379229 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || || | | ||||| || || |||||| | ||||||| | || | || || Sbjct 379228 TCAGCAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCAGACTA 379169 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| || || || || || ||| | || || | || |||||||| Sbjct 379168 TAACATTCAGAAGGAGTCAACACTTCATCTTGTACTCCGTCTTAGAGGAGG 379118 >seq13065 Length=295510 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || || ||||||| | || || || | || Sbjct 163634 ATGCAGATCTTTGTGAAAACACTCACAGGAAAGACCATCACTTTGGAGGTTGAACCTTCA 163693 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| ||||||||||| ||||| || || || Sbjct 163694 GACACCATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGAATTCCCCCAGATCAG 163753 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || |||||||| || ||| | ||||||| || ||| || || |||||| Sbjct 163754 CAACGTCTCATCTTTGCCGGTAAGCAACTTGAAGATGGCCGTACTTTGTCAGACTACAAT 163813 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| |||||||| || || |||||||| | | | |||||||| Sbjct 163814 ATTCAGAAAGAATCAACCCTCCATTTAGTCTTGCGTTTGAGAGGAGG 163860 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | || || || | || ||| | || || || | || Sbjct 163862 ATGCAAATTTTCGTGAAAACACTTACTGGAAAGACAATTACACTTGAGGTTGAACCATCA 163921 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| ||||| ||||| || || || Sbjct 163922 GACACCATTGAAAATGTAAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 163981 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || |||||||| |||||| | ||||||| ||| ||| || || |||||| Sbjct 163982 CAACGTCTCATCTTTGCCGGTAAACAACTTGAAGATGGTCGTACTTTGTCAGACTACAAT 164041 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| |||||||| || || |||||||| | | | |||||||| Sbjct 164042 ATTCAGAAAGAATCAACCCTCCATTTAGTCTTGCGTTTGAGAGGAGG 164088 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || || | || || || | || ||| | || || || | || Sbjct 164090 ATGCAAATTTTCGTGAAAACACTTACTGGAAAGACAATTACACTTGAGGTTGAACCATCA 164149 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||||||||| ||||| || || || Sbjct 164150 GACACCATTGAAAATGTAAAGGCTAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 164209 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || || | || |||||||| |||||| | ||||||| || ||| || || ||||| Sbjct 164210 CAACGTCTCATCTTTGCCGGTAAACAACTTGAAGATGGCCGTACTTTGTCAGACTACAAC 164269 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||||| |||||||| || || |||||||| | | | ||||||||| Sbjct 164270 ATTCAGAAAGAATCGACCCTCCATTTAGTCTTGCGTTTGAGAGGAGGA 164317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432981226830530