Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq45842 145 8e-30 >seq45842 Length=221613 Score = 145 bits (160), Expect = 8e-30 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 |||||||| || || ||||| ||||||||||| || | ||||| ||| |||||| Sbjct 81557 TTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGATATGAAATGT 81616 Query 93542 TTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCG 93601 ||| |||||||| || || ||||||| || ||||||||| | ||| ||||| || Sbjct 81617 CGCTCTTCATCTTTCAGGTTTTCCCAATGCCCTAAATCTTTTGACAAATCAACTTCCTCT 81676 Query 93602 ACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATT 93661 ||||||| || || ||||||||||| |||||||| | ||| ||||| || || ||||| Sbjct 81677 GCAGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATCTGCCAGATGTCATGGTACTGAATG 81736 Query 93662 GGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCT 93706 || || | ||||| || || ||||| || | || |||||| Sbjct 81737 GGGAAGACAACAAATCGTCGTGGATTATCCTTCAACAATGGCTCT 81781 Score = 136 bits (150), Expect = 4e-27 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 93133 CTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGC 93192 |||||||||||| || | ||| || | | ||||| |||||| ||||| || || | || Sbjct 80261 CTCATTGCTGAAAGTAAGACCAGGCATAATTCCTCTTTTCTTCAGCCAGAAAATAGCTGC 80320 Query 93193 AAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAA 93252 |||||||||||| ||||| || ||||| || |||||||| || |||| | || || Sbjct 80321 AAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAAAGCTACAACTCTCTCTGC--- 80377 Query 93253 ATTTGCGGAATTACT---GCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACA 93309 || ||| | |||||| |||||||||| | |||||||| || |||| || | ||| Sbjct 80378 ATATGCTGCATTACTTTCATTGATCCATTTAATGGCCCAATCTGCCTTTTCTTTTACACA 80437 Query 93310 AGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTC 93344 || | ||| || ||||| ||||| || ||||||| Sbjct 80438 TGGCATTGTCTCAATAGCATTAAACAGATAATCTC 80472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556403742576880