Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq8761 91.5 3e-13 seq59425 89.7 1e-12 seq36925 89.7 1e-12 seq15268 89.7 1e-12 seq29892 86.0 1e-11 >seq8761 Length=3254 Score = 91.5 bits (100), Expect = 3e-13 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 142495 GGTGAGATA-GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGT 142553 ||| | ||| |||||| |||||||||||||||||| ||||||||||||| |||||| Sbjct 753 GGTTACATACGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGT 812 Query 142554 GGGTTCGAGCCCCACATCGGGC 142575 ||||||||||||||| | |||| Sbjct 813 GGGTTCGAGCCCCACGTTGGGC 834 Score = 91.5 bits (100), Expect = 3e-13 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 142495 GGTGAGATA-GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGT 142553 ||| | ||| |||||| |||||||||||||||||| ||||||||||||| |||||| Sbjct 2724 GGTTACATACGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGT 2783 Query 142554 GGGTTCGAGCCCCACATCGGGC 142575 ||||||||||||||| | |||| Sbjct 2784 GGGTTCGAGCCCCACGTTGGGC 2805 >seq59425 Length=216449 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 45 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 104 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 105 CCCACGTTGGGC 116 >seq36925 Length=439 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 291 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 350 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 351 CCCACGTTGGGC 362 >seq15268 Length=126368 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 37448 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 37389 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 37388 CCCACGTTGGGC 37377 >seq29892 Length=719 Score = 86.0 bits (94), Expect = 1e-11 Identities = 69/82 (84%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 142495 GGTGAGATA-GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGT 142553 ||| | ||| |||||| |||||||||| ||||||| ||||||||||||| |||||| Sbjct 590 GGTTACATACGCCCGGCTAGCTCAGTCTGTAGAGCATGAGACTCTTAATCTCAGGGTCGT 531 Query 142554 GGGTTCGAGCCCCACATCGGGC 142575 ||||||||||||||| | |||| Sbjct 530 GGGTTCGAGCCCCACGTTGGGC 509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026972086681742