Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq63207 167 4e-36 seq13065 122 2e-22 >seq63207 Length=555540 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||| || | ||| | || || || ||||| ||||| ||||| || || ||| Sbjct 322001 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCCGAG 322060 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || || ||||| || | |||||| || || |||||| Sbjct 322061 AGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGA 322120 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||||||||| || ||||| |||||||| || | | ||| || Sbjct 322121 ATTCCTTCTTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACC 322180 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||||||||| || || |||||||| || || |||||||| Sbjct 322181 TCTAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCAT 322227 Score = 167 bits (184), Expect = 4e-36 Identities = 176/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 68230 AATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAAT 68289 ||||||| || || | |||| ||| | || || || ||||| || || |||||||| | Sbjct 378657 AATTTCCACCACGTAAACGCAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGT 378716 Query 68290 CGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGG 68349 | ||||| ||||| |||||||| | || || || || || || | |||||| || || | Sbjct 378717 CTGAGAGGGTCCTTCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTTTGCTGATCTG 378776 Query 68350 GTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATT 68409 ||||||| ||||| |||||||||||||| || |||||| || || ||||||| || || Sbjct 378777 GTGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTT 378836 Query 68410 CTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || | ||||| ||||| || || | || ||||| ||||| ||||| Sbjct 378837 CTACCTCAAGTGTGATAGTTTTACCTGTCAAAGTTTTGACAAATATTTGCAT 378888 Score = 163 bits (180), Expect = 5e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||| || | ||| | || || || ||||| || || ||||| || || ||| Sbjct 379346 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTGTAGTCTGAG 379405 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || || ||||| || | |||||| || || || ||| Sbjct 379406 AGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGA 379465 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||||||||| || ||||| |||||||| || | | ||| || Sbjct 379466 ATTCCTTCTTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACC 379525 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||| ||||||||||| || || |||||||| || || ||||||||| Sbjct 379526 TCCAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCATT 379573 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||| || | ||| | || || || ||||| || || ||||| || || ||| Sbjct 378890 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAG 378949 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || || ||||| || | |||||| || || || ||| Sbjct 378950 AGCGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGA 379009 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||||||||| || |||||| || || ||||||| || |||||| Sbjct 379010 ATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACC 379069 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| ||||| || || | || ||||| ||||| ||||| Sbjct 379070 TCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379116 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||| || | ||| | || || || ||||| || || |||||||| || ||| Sbjct 379118 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAG 379177 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || |||||||| | || || || ||||| || | |||||| || || || ||| Sbjct 379178 AGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGA 379237 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| |||||||||||||| || |||||| || || | ||||| || |||||| Sbjct 379238 ATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGAGTCTGATGGTTCTACC 379297 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| ||||| || || | || ||||| ||||| ||||| Sbjct 379298 TCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379344 Score = 125 bits (138), Expect = 1e-23 Identities = 169/235 (72%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| ||| | || || || |||| ||| | || || | ||||| || || ||||||| Sbjct 321525 TTTAGTTTGCACCACGTAGACGCAGTACAAGATGAAGTATCGACTCCTTCTGAATGTTAT 321584 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | || ||||| | | ||| || | ||||| || ||||| | | |||||| || | Sbjct 321585 AGTCCGAGAGGATTC---CATATTGAAGTTGCTTACCAGCGAAAAGCAATCTTTGCTGAT 321641 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | | |||||| ||||| |||||||||||||| || ||||| || || |||||||||| Sbjct 321642 CTGATGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACATTTTCAATTGTGTCTGCTG 321701 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| | | ||||| ||||| || || | || |||| ||||| ||||| Sbjct 321702 GTTCTACCGCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGATAAATATTTGCAT 321756 >seq13065 Length=295510 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 68247 CGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCA 68306 ||||| || || || || || || ||||| || || || || || || | || | ||| Sbjct 164076 CGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGACAAAGTACGACCA 164017 Query 68307 TCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTG 68366 ||||| | || || ||||| || ||||| | ||| || || || ||||| ||||||||| Sbjct 164016 TCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTG 163957 Query 68367 TCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATG 68426 || || ||||| ||||| || || |||||||||| || ||| || || | || || Sbjct 163956 TCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAACCTCAAGTGTAATT 163897 Query 68427 GTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||| || || || || ||||| || ||||| Sbjct 163896 GTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCAT 163862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920865955374640