Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq13065 136 3e-27 seq63207 104 2e-17 >seq13065 Length=295510 Score = 136 bits (150), Expect = 3e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| |||||||| | || |||||||| ||||||||||| || || |||||| ||| Sbjct 164302 CAAGACTAAATGGAGGGTCGATTCTTTCTGAATGTTGTAGTCTGACAAAGTACGGCCATC 164243 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||||||||||||||| || |||||||||| || || || || ||||| ||||||||||| Sbjct 164242 TTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTC 164183 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||||| |||| | ||||| |||||| | | ||| || || | || | || Sbjct 164182 CTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAACCTCAAGTGTAATTGT 164123 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || || ||||| || ||||| ||||| Sbjct 164122 CTTTCCAGTAAGTGTTTTCACGAAAATTTGCAT 164090 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| |||||||| | || |||||||| ||||| ||||| || || |||||| ||| Sbjct 163846 CAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGACAAAGTACGGCCATC 163787 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||||||||| ||||| || |||||||||| || || || || ||||| ||||||||||| Sbjct 163786 TTCAAGTTGCTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTC 163727 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 || || |||| | ||||| |||||| | | ||| || |||| || | || Sbjct 163726 TTGGATTTTAGCCTTTACATTTTCAATGGTGTCTGAAGGTTCAACCTCCAAAGTGATGGT 163667 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || || ||||| ||||| |||||||| Sbjct 163666 CTTTCCTGTGAGTGTTTTCACAAAGATCTGCAT 163634 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 114170 CAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATC 114229 ||| |||||||| | || |||||||| ||||| ||||| || || ||||||| ||| Sbjct 164074 CAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGACAAAGTACGACCATC 164015 Query 114230 TTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289 ||||||||||||||| || |||||||||| || || || || ||||| ||||| ||||| Sbjct 164014 TTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTGTC 163955 Query 114290 GGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGT 114349 ||||| |||| | ||||| |||||| | | ||| || || | || | || Sbjct 163954 CTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAACCTCAAGTGTAATTGT 163895 Query 114350 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || || ||||| || ||||| ||||| Sbjct 163894 CTTTCCAGTAAGTGTTTTCACGAAAATTTGCAT 163862 >seq63207 Length=555540 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| || | || | ||||||||||||||||||| Sbjct 378920 GTTGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCTTCCATCTTCAAGTTGTTTACCA 378979 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || | | || || || |||||||| ||||||||||| |||||| ||| Sbjct 378980 GCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTG 379039 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||||| | | ||| || || | || | ||||| ||||||| |||| Sbjct 379040 ACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTGATAGTTTTACCGGTCAAAGTT 379099 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| || ||||| Sbjct 379100 TTGACAAATATTTGCAT 379116 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || |||||||||||||| || | || | | ||||||||||||||||||| Sbjct 322031 GTTGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTTCTACCATCTTCAAGTTGTTTACCA 322090 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || | | || || || || ||||| ||||||||||| |||||| ||| Sbjct 322091 GCGAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTG 322150 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | ||| || | | ||| || || | || | ||||| || || || || Sbjct 322151 ACATTTTCGATGGTATCAGAAGGTTCCACCTCTAAAGTGATGGTTTTACCAGTAAGGGTC 322210 Query 114366 TTTACAAAAATCTGCAT 114382 |||||||| |||||||| Sbjct 322211 TTTACAAAGATCTGCAT 322227 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| || | || | ||||||||||||||||||| Sbjct 379376 GTCGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTTCTTCCATCTTCAAGTTGTTTACCA 379435 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| | || | | || || || |||||||| ||||||||||| |||||| ||| Sbjct 379436 GCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTG 379495 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | ||| || | | ||| || |||| || | ||||| || || || || Sbjct 379496 ACATTTTCGATGGTATCAGAAGGTTCCACCTCCAAAGTGATGGTTTTACCAGTAAGGGTC 379555 Query 114366 TTTACAAAAATCTGCAT 114382 |||||||| |||||||| Sbjct 379556 TTTACAAAGATCTGCAT 379572 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||||||||||||||||||| | || | | || || || |||||||| |||||||| Sbjct 379189 ATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTT 379248 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| |||||| ||| | | ||||| | ||| | | ||| || || | || | Sbjct 379249 GTCTTGAATCTTGGCTTTGACGTTTTCAATTGAGTCTGATGGTTCTACCTCAAGTGTGAT 379308 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| ||||||| |||||| ||||| || ||||| Sbjct 379309 AGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379344 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 114150 CAAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAA 114209 ||| | || ||||||| | || || | ||| | || || || || |||||||| || Sbjct 378656 CAATTTCCACCACGTAAACGCAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAG 378715 Query 114210 TCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCC 114269 || | || | ||||||||||||||||||||| | || | | || || || Sbjct 378716 TCTGAGAGGGTCCTTCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTTTGCTGATCT 378775 Query 114270 GGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGAT 114329 || ||||| ||||||||||| |||||| ||| | | ||||| ||||| | | | Sbjct 378776 GGTGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGT 378835 Query 114330 TCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || | || | ||||| || |||| |||||| ||||| || ||||| Sbjct 378836 TCTACCTCAAGTGTGATAGTTTTACCTGTCAAAGTTTTGACAAATATTTGCAT 378888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419798185083144