Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq63207 123 6e-23 seq13065 100 7e-16 >seq63207 Length=555540 Score = 123 bits (136), Expect = 6e-23 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||| ||||||| || || || || || |||||||| | ||| || | ||| ||| Sbjct 379133 AGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAGAGGGTTCTTCCATCT 379192 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | |||||| || ||||| |||| | || ||| ||||| ||||||||||| Sbjct 379193 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGA---TCTGGAGGAATTCCTTCTTTG 379249 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || || ||||| |||||||| || || || | |||||| || || ||||| Sbjct 379250 TCTTGAATCTTGGCTTTGACGTTTTCAATTGAGTCTGATGGTTCTACCTCAAGTGTGATA 379309 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||| ||| ||||| ||||| ||||| Sbjct 379310 GTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379344 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||| ||||||| || || || || || || ||||| | |||||| | ||| ||| Sbjct 378905 AGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCTTCCATCT 378964 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | |||||| || ||||| |||| | || ||| ||||| ||||||||||| Sbjct 378965 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGA---TCTGGAGGAATTCCTTCTTTG 379021 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || || ||||| |||||||| || | || | |||||| || || ||||| Sbjct 379022 TCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTGATA 379081 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||| ||| ||||| ||||| ||||| Sbjct 379082 GTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379116 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288243 ATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC 288302 || |||||| || | | ||||| ||||||| || || || || || |||||||| Sbjct 378658 ATTTCCACCACGTAAACGCAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTC 378717 Query 288303 GGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATC 288362 | ||| || | ||| ||||| | |||||| || || || |||| | || ||| Sbjct 378718 TGAGAGGGTCCTTCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGG 378777 Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| ||||||||||| || || || || ||||| |||||||| || | || | ||| Sbjct 378778 TGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTC 378837 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || || ||||| || || || |||| ||| ||||| ||||| ||||| Sbjct 378838 TACCTCAAGTGTGATAGTTTTACCTGTCAAAGTTTTGACAAATATTTGCAT 378888 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||| ||||||| || || ||||| || || ||||| | ||| || | || ||| Sbjct 322016 AGTACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTTCTACCATCT 322075 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | |||||| || ||||| |||| | || ||| ||| ||||||||||| || Sbjct 322076 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCT 322135 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 || || || ||||| || ||||| || | ||| | ||| || || | ||||| || Sbjct 322136 TGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACCTCTAAAGTGATGGTT 322195 Query 288442 TTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| || || |||||||| Sbjct 322196 TTACCAGTAAGGGTCTTTACAAAGATCTGCAT 322227 Score = 98.7 bits (108), Expect = 2e-15 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||| ||||||| || || || || || || ||||| | ||| || | ||| ||| Sbjct 379361 AGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTTCTTCCATCT 379420 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || | |||||| || ||||| |||| | || ||| ||||| ||||||||||| Sbjct 379421 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGA---TCTGGAGGAATTCCTTCTTTG 379477 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || || || ||||| || ||||| || | ||| | ||| || || | ||||| Sbjct 379478 TCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACCTCCAAAGTGATG 379537 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || || || || ||||| || || ||||||||| Sbjct 379538 GTTTTACCAGTAAGGGTCTTTACAAAGATCTGCATT 379573 Score = 91.5 bits (100), Expect = 3e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||| ||||||| || || || || || |||||||| | ||| || | || ||| Sbjct 321773 AGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTATAGTCTGAGAGGGTTCTACCATCT 321832 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCC 288381 || | |||||| || ||||| |||| | || ||| |||||||||||||||||| Sbjct 321833 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGGATTCCTTCTTTATCT 321892 Query 288382 TGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTC 288441 || | || | ||| || ||||| || | || | |||||| || || ||||| || Sbjct 321893 TGAAGCTTAGATTTGACATTTTCAATTGCGTCTGATGGTTCTACCTCAAGTGTGATAGTT 321952 Query 288442 TTCCCGGTCA 288451 || ||||||| Sbjct 321953 TTACCGGTCA 321962 >seq13065 Length=295510 Score = 100 bits (110), Expect = 7e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || ||||| ||||| | | || || || ||||| | ||| || || || || Sbjct 163825 TTCTTTCTGAATATTGTAGTCTGACAAAGTACGGCCATCTTCAAGTTGCTTACCGGCAAA 163766 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| ||||| || ||| |||||| ||||||||||| || |||||||| || || || Sbjct 163765 GATGAGACGTTGCTGA---TCTGGGGGAATTCCTTCTTTGTCTTGGATTTTAGCCTTTAC 163709 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | || | ||| || || | ||||| ||||| || || || || || Sbjct 163708 ATTTTCAATGGTGTCTGAAGGTTCAACCTCCAAAGTGATGGTCTTTCCTGTGAGTGTTTT 163649 Query 288459 GACGAATATCTGCAT 288473 || || |||||||| Sbjct 163648 CACAAAGATCTGCAT 163634 Score = 100 bits (110), Expect = 7e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || || || ||||| | | || || || ||||| | |||||| || || || Sbjct 164281 TTCTTTCTGAATGTTGTAGTCTGACAAAGTACGGCCATCTTCAAGTTGTTTACCGGCAAA 164222 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| ||||| || ||| |||||| ||||||||||| |||||||| || || || || Sbjct 164221 GATGAGACGTTGCTGA---TCTGGGGGAATTCCTTCTTTGTCCTGGATCTTAGCCTTTAC 164165 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | || | ||| || || || || || ||||| || || || || || Sbjct 164164 ATTTTCAATGGTGTCTGATGGTTCAACCTCAAGTGTAATTGTCTTTCCAGTAAGTGTTTT 164105 Query 288459 GACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 164104 CACGAAAATTTGCAT 164090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178661963388836