Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq61240 96.9 4e-15 seq55995 96.9 4e-15 seq33089 96.9 4e-15 seq14972 96.9 4e-15 seq11408 96.9 4e-15 seq63522 93.3 5e-14 seq58119 93.3 5e-14 seq51393 93.3 5e-14 seq63207 91.5 2e-13 seq395 91.5 2e-13 seq13065 87.8 2e-12 seq60785 84.2 2e-11 >seq61240 Length=1860 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 || ||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 838 AATAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 779 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 778 TAACCACTATACTACCGAGGA 758 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 || ||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 1712 AATAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1653 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 1652 TAACCACTATACTACCGAGGA 1632 >seq55995 Length=98891 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/105 (82%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 5067 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 5008 Query 57067 TACTACCGAGGATTGAATATA-TAACTTGA-ATATTGCAATTTAG 57109 |||||||||||| | | ||| |||| ||| || |||| |||| Sbjct 5007 TACTACCGAGGACTTACCATAGTAACGTGACGGATAGCAACTTAG 4963 >seq33089 Length=5378 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 || ||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 674 AATAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 615 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 614 TAACCACTATACTACCGAGGA 594 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 || ||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 1535 AATAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1476 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 1475 TAACCACTATACTACCGAGGA 1455 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 || ||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 4754 AATAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 4695 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 4694 TAACCACTATACTACCGAGGA 4674 >seq14972 Length=104360 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| || | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 97722 AAATATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 97781 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 97782 TAACCACTATACTACCGAGGA 97802 >seq11408 Length=986 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 || ||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 122 AATAATGTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 63 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 62 TAACCACTATACTACCGAGGA 42 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 986 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 927 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 926 TACTACCGAGGA 915 >seq63522 Length=3463 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 || ||| | |||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 763 AATAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 704 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||||| |||| Sbjct 703 TAACCACTATACTACCAAGGA 683 >seq58119 Length=236802 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 57008 TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 57067 |||||||| |||||||||| ||||||||||||||||||||| ||||| |||||||| Sbjct 190021 TCCTCGGCGGAGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGTGATACTAACCACTAT 189962 Query 57068 ACTACCGAGGA 57078 ||||||||||| Sbjct 189961 ACTACCGAGGA 189951 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 64450 CTCCCCGGCGGAGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 64391 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 64390 TACTACCGAGGA 64379 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| |||||||||| |||||| |||||||||||||| ||||| ||||||| Sbjct 46661 CTCCCCGGCGGAGAATCGAACCCCGGTCTCGCGCGTGACAGGCGGGGATACTAACCACTA 46602 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 46601 TACTACCGAGGA 46590 >seq51393 Length=190741 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/87 (85%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | | |||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 13145 CTCCCCGGCGGGGATTCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 13086 Query 57067 TACTACCGAGGA--TTGAA-TATATAA 57090 |||||||||||| ||||| |||| || Sbjct 13085 TACTACCGAGGAATTTGAAGTATACAA 13059 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/86 (84%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 57008 TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 57067 ||| |||| | | || ||||| ||||||||||||||||||||| ||||| |||||||| Sbjct 11209 TCCCCGGCGGGGATTCAAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTAT 11150 Query 57068 ACTACCGAGGA--TTGAA-TATATAA 57090 ||||||||||| ||||| |||| || Sbjct 11149 ACTACCGAGGAATTTGAAGTATACAA 11124 >seq63207 Length=555540 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| | ||| | || | ||| | ||| |||||||||||| ||||| || | Sbjct 322000 ACCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCCGA 322059 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | | || || || || ||||||||||| || | || ||||| || | ||| Sbjct 322060 GAGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGG 322119 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || |||| | ||| | || | ||||| | | | || || | ||||| Sbjct 322120 AATTCCTTCTTTGT-CTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCA 322178 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || | ||||||||||| || || || |||||||||||||| ||||| Sbjct 322179 CCTCTAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCAT 322227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| | ||| | || | ||| | ||| |||||| ||||| ||||| || | Sbjct 379345 ACCTCCTCTAAGACGGAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTGTAGTCTGA 379404 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || | | || || || || ||||||||||| || | || ||||| || | || Sbjct 379405 GAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGG 379464 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || ||||| ||| | || | ||||| | | | || || | ||||| Sbjct 379465 AATTCCTTCTTTGTCT-TGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCA 379523 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 | || | ||||||||||| || || || |||||||||||||| |||||| || Sbjct 379524 CCTCCAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCATTGTC 379576 >seq395 Length=120883 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 57001 AATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCA 57060 |||| ||| ||||| | |||||||||||||||||||| ||||||||||| ||||| | Sbjct 18789 AATTAGCTCTTCGGCGGGGAATCGAACCCTGGTCTCCCGTGTGACAGGCGGGGATACTAA 18730 Query 57061 CCACTATACTACCGAGGA 57078 ||||||| |||||||||| Sbjct 18729 CCACTATGCTACCGAGGA 18712 >seq13065 Length=295510 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||||||||| |||||||| || ||||| | || || || ||||||||||| || | Sbjct 163861 ACCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGA 163802 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||| || | || || || |||||||| || || ||||| || ||||| || | || Sbjct 163801 CAAAGTACGGCCATCTTCAAGTTGCTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGG 163742 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | || ||||| |||||| || | | | | ||||| | ||| || Sbjct 163741 AATTCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATGGTGTCTGAAGGTTCAAC 163682 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || || || || || || |||||||| ||||| Sbjct 163681 CTCCAAAGTGATGGTCTTTCCTGTGAGTGTTTTCACAAAGATCTGCAT 163634 >seq60785 Length=27705 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 || ||| | |||| |||| | |||||||||| |||||||||||||||||||| |||| Sbjct 8793 AATAATGTCCTCCCCGGCGGGGAATCGAACCCCTGTCTCCCGCGTGACAGGCGGGGATAC 8852 Query 57058 TCACCACTATACTACCGAG 57076 | | ||||||||||||||| Sbjct 8853 TAAACACTATACTACCGAG 8871 Score = 84.2 bits (92), Expect = 2e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 57020 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 |||||||||| ||||||||||||||||||||| ||||| || |||||||||||||||| Sbjct 9666 AATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACTACTATACTACCGAGGA 9724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542766944514080