Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq13065 131 2e-25 seq63207 87.8 2e-12 >seq13065 Length=295510 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||||||| |||||||| | | |||| || || ||||| |||||||| | Sbjct 163860 CCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGAC 163801 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || ||||| ||||||| | |||| ||||| || || || || || Sbjct 163800 AAAGTACGGCCATCTTCAAGTTGCTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGA 163741 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| |||||| |||| | ||| | |||||| | | || ||| Sbjct 163740 ATTCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATGGTGTCTGAAGGTTCAACC 163681 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || || ||||| ||||| |||||||| Sbjct 163680 TCCAAAGTGATGGTCTTTCCTGTGAGTGTTTTCACAAAGATCTGCAT 163634 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||||||| |||||||| | | | || || || |||||||||||||| | Sbjct 164316 CCTCCTCTCAAACGCAAGACTAAATGGAGGGTCGATTCTTTCTGAATGTTGTAGTCTGAC 164257 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || ||||||||||||| | |||| ||||| || || || || || Sbjct 164256 AAAGTACGGCCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGA 164197 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||||||||| ||| || |||| | ||| | |||||| | | || ||| Sbjct 164196 ATTCCTTCTTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAACC 164137 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| || ||||| || ||||| ||||| Sbjct 164136 TCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCAT 164090 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||||||| |||||||| | | |||| || || ||||| |||||||| | Sbjct 164088 CCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGAC 164029 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| || || ||||||||||||| | |||| ||||| || || || || || Sbjct 164028 AAAGTACGACCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGA 163969 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || |||| | ||| | |||||| | | || ||| Sbjct 163968 ATTCCTTCCTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAACC 163909 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||| || ||||| || ||||| ||||| Sbjct 163908 TCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCAT 163862 >seq63207 Length=555540 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/197 (71%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||||||||||||||| | || | || || ||||||||||| | Sbjct 322032 TTGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTTCTACCATCTTCAAGTTGTTTACCAG 322091 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTT 138537 | || | | || || || || || || ||||||||||| ||| | || | ||| Sbjct 322092 CGAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTTGTC-TTGAATCTTGGCTTTG 322150 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 | | ||| | ||| || | | |||||||| | || | ||||||||||| || || Sbjct 322151 ACATTTTCGATGGTATCAGAAGGTTCCACCTCTAAAGTGATGGTTTTACCAGTAAGGGTC 322210 Query 138598 TTTACAAAAATCTGCAT 138614 |||||||| |||||||| Sbjct 322211 TTTACAAAGATCTGCAT 322227 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| | || | || || ||||||||||| | Sbjct 379379 GACTCCTTCTGAATGTTGTAGTCTGAGAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCG 379438 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 | || | | || || || ||||| || ||||||||||| ||| | || | ||| | Sbjct 379439 AAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTC-TTGAATCTTGGCTTTGAC 379497 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | ||| || | | |||||||| | || | ||||||||||| || || || Sbjct 379498 ATTTTCGATGGTATCAGAAGGTTCCACCTCCAAAGTGATGGTTTTACCAGTAAGGGTCTT 379557 Query 138600 TACAAAAATCTGCAT 138614 |||||| |||||||| Sbjct 379558 TACAAAGATCTGCAT 379572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495855080228640