Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq63207 131 1e-25 seq13065 93.3 3e-14 >seq63207 Length=555540 Score = 131 bits (144), Expect = 1e-25 Identities = 160/217 (74%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || ||||| |||||||| || ||| |||| | ||||| | ||| Sbjct 322024 ATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTTCTACCATCTTCAAGTTG 322083 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| |||||| | ||||| | || || || |||||||||||| ||||| ||| || Sbjct 322084 TTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGAATCTT 322143 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| ||| |||| || ||||| | ||| || ||||| || ||||||||||| || Sbjct 322144 GGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACCTCTAAAGTGATGGTTTTACCAGT 322203 Query 15153 CAGAGTTTTTACAAAAATTTGCAT-ATTTGAAATAAA 15188 || || |||||||| || ||||| | ||||| ||| Sbjct 322204 AAGGGTCTTTACAAAGATCTGCATCGTCTGAAAAAAA 322240 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || || |||||||| || ||| |||| | ||||| | ||| Sbjct 379369 ATGAAGTGTCGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTTCTTCCATCTTCAAGTTG 379428 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| |||||| | ||||| | || || || ||||||||||| ||||| ||| || Sbjct 379429 TTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTT 379488 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| ||| |||| || ||||| | ||| || || || || ||||||||||| || Sbjct 379489 GGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACCTCCAAAGTGATGGTTTTACCAGT 379548 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || || |||||||| || ||||| Sbjct 379549 AAGGGTCTTTACAAAGATCTGCAT 379572 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || || |||||||| || ||| |||| | ||||| | ||| Sbjct 378913 ATGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCTTCCATCTTCAAGTTG 378972 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| |||||| | ||||| | || || || ||||||||||| ||||| ||| || Sbjct 378973 TTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTT 379032 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| || |||| || || || |||||| || | || || |||||||| || Sbjct 379033 GGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTGATAGTTTTACCGGT 379092 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || |||||| ||||| ||||||||| Sbjct 379093 CAAAGTTTTGACAAATATTTGCATA 379117 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | || | |||||| || || || || || ||||| || || | Sbjct 378662 CCACCACGTAAACGCAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAG 378721 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | || | ||||| | |||||| ||||| | ||||| | || || || |||| Sbjct 378722 AGGGTCCTTCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGTGGA 378781 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| ||||| ||| ||| ||| || |||| || || || |||||| Sbjct 378782 ATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACC 378841 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || || ||||||||||||| |||||| ||||| ||||||||| Sbjct 378842 TCAAGTGTGATAGTTTTACCTGTCAAAGTTTTGACAAATATTTGCATA 378889 Score = 100 bits (110), Expect = 2e-16 Identities = 145/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| || || || || || ||||| || || ||| |||| | ||||| | ||| Sbjct 379141 ATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAGAGGGTTCTTCCATCTTCAAGTTG 379200 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||| |||||| | ||||| | || || || ||||||||||| ||||| ||| || Sbjct 379201 TTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTT 379260 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| || |||| || | || |||||| || | || || |||||||| || Sbjct 379261 GGCTTTGACGTTTTCAATTGAGTCTGATGGTTCTACCTCAAGTGTGATAGTTTTACCGGT 379320 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || |||||| ||||| ||||||||| Sbjct 379321 CAAAGTTTTGACAAATATTTGCATA 379345 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/206 (70%), Gaps = 5/206 (2%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||| | || || || || ||||| || || ||| |||| | | || | ||| Sbjct 321556 ATGAAGTATCGACTCCTTCTGAATGTTATAGTCCGAGAGGATTC---CATATTGAAGTTG 321612 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || |||||| | | ||| | || || || |||||||||||| ||||| ||| || Sbjct 321613 CTTACCAGCGAAAAGCAATCTTTGCTGATCTGATGGAATTCCTTCTTTGTCTTGAATCTT 321672 Query 15093 GCTTTTTACAATTTCTATAGTATC-GCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 | ||| ||| |||| || || || ||| |||||| | | || || |||||||| | Sbjct 321673 GGCTTTGACATTTTCAATTGTGTCTGCT-GGTTCTACCGCAAGTGTGATAGTTTTACCGG 321731 Query 15152 TCAGAGTTTTTACAAAAATTTGCATA 15177 ||| |||||| | ||| ||||||||| Sbjct 321732 TCAAAGTTTTGATAAATATTTGCATA 321757 >seq13065 Length=295510 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | || |||||||| ||||| || ||||| || || ||||| || || Sbjct 163860 CCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTC--TG 163803 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | ||||| | ||| || || || | || | ||| || || || | Sbjct 163802 ACAAAGTACGGCCATCTTCAAGTTGCTTACCGGCAAAGATGAGACGTTGCTGATCTGGGG 163743 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||| ||||| ||||| |||||| |||| || || || | ||| | Sbjct 163742 GAATTCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATGGTGTCTGAAGGTTCAA 163683 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || || || ||||| || ||||| || ||||| ||||| || ||||| Sbjct 163682 CCTCCAAAGTGATGGTCTTTCCTGTGAGTGTTTTCACAAAGATCTGCAT 163634 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | || |||||||| ||||| || ||||| || || ||||| || || Sbjct 164088 CCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTC--TG 164031 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | ||||| | |||||| || || | || | ||| || || || | Sbjct 164030 ACAAAGTACGACCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGG 163971 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||||||||| || || |||||| |||| || || || ||| | Sbjct 163970 GAATTCCTTCCTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAA 163911 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||||| || || || || || ||||| || |||||||||||| Sbjct 163910 CCTCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCATA 163861 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | || |||||||| ||||| || ||||| || |||||||| || || Sbjct 164316 CCTCCTCTCAAACGCAAGACTAAATGGAGGGTCGATTCTTTCTGAATGTTGTAGTC--TG 164259 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | ||||| | |||||| || || | || | ||| || || || | Sbjct 164258 ACAAAGTACGGCCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGG 164199 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||||||||| ||||| || || |||||| |||| || || || ||| | Sbjct 164198 GAATTCCTTCTTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAA 164139 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||||| || || || || || ||||| || |||||||||||| Sbjct 164138 CCTCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCATA 164089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357105995041670