Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq13065 140 8e-28 seq63207 129 1e-24 seq4946 86.0 1e-11 >seq13065 Length=295510 Score = 140 bits (154), Expect = 8e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| ||||| || || || | ||||||||| | |||||| | |||||||| || || Sbjct 164292 TGGAGGGTCGATTCTTTCTGAATGTTGTAGTCTGACAAAGTACGGCCATCTTCAAGTTGT 164233 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| ||||||||||| ||||| || || |||||||||| ||||| ||||| Sbjct 164232 TTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTA 164173 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||| | |||||||| || ||| || || | || || ||||| || || Sbjct 164172 GCCTTTACATTTTCAATGGTGTCTGATGGTTCAACCTCAAGTGTAATTGTCTTTCCAGTA 164113 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || |||||||| |||||||| Sbjct 164112 AGTGTTTTCACGAAAATTTG 164093 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || || || || || | |||||||| | |||||| | |||||||| || ||| Sbjct 163836 TGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGACAAAGTACGGCCATCTTCAAGTTGC 163777 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| ||||||||||| ||||| || || |||||||||| || || || || Sbjct 163776 TTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTCTTGGATTTTA 163717 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||| | |||||||| | ||| || ||||| ||||| ||||| || ||| Sbjct 163716 GCCTTTACATTTTCAATGGTGTCTGAAGGTTCAACCTCCAAAGTGATGGTCTTTCCTGTG 163657 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || ||||||||||| || || Sbjct 163656 AGTGTTTTCACAAAGATCTG 163637 Score = 127 bits (140), Expect = 5e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || || || || || | |||||||| | |||||| | |||||||| || || Sbjct 164064 TGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGACAAAGTACGACCATCTTCAAGTTGT 164005 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| ||||||||||| ||||| || || ||||||||| ||||| ||||| Sbjct 164004 TTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTA 163945 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||| | |||||||| || ||| || || | || || ||||| || || Sbjct 163944 GCCTTTACATTTTCAATGGTGTCTGATGGTTCAACCTCAAGTGTAATTGTCTTTCCAGTA 163885 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || |||||||| |||||||| Sbjct 163884 AGTGTTTTCACGAAAATTTG 163865 >seq63207 Length=555540 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || || || |||||||| || | ||||||||||| | || ||||||||| Sbjct 378905 AGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCTTCCATCT 378964 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || ||||| || | | ||||| || ||| |||||||||| || Sbjct 378965 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCT 379024 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| || ||| ||| | ||||||| || |||||| || | ||||| || Sbjct 379025 TGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTGATAGTT 379084 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | |||||| ||||| ||||| Sbjct 379085 TTACCGGTCAAAGTTTTGACAAATATTTG 379113 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| || || || |||||||| || | ||| ||||| | | ||||||||||| Sbjct 378676 CAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAGAGGGTCCTTCCATC 378735 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||| || || || || || || || | | ||||| || || |||||||||| || Sbjct 378736 TTCAAGTTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTTGTC 378795 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 |||||||| || ||| ||| | ||||||| || |||||| || | ||||| || Sbjct 378796 TTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTGATAGT 378855 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | |||||| ||||| ||||| Sbjct 378856 TTTACCTGTCAAAGTTTTGACAAATATTTG 378885 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || || || |||||||| || | ||| ||||| | | || ||||||||| Sbjct 379133 AGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAGAGGGTTCTTCCATCT 379192 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || ||||| || | | ||||| || ||| |||||||||| || Sbjct 379193 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCT 379252 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| || ||| ||| | | ||||| || |||||| || | ||||| || Sbjct 379253 TGAATCTTGGCTTTGACGTTTTCAATTGAGTCTGATGGTTCTACCTCAAGTGTGATAGTT 379312 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || | |||||| ||||| ||||| Sbjct 379313 TTACCGGTCAAAGTTTTGACAAATATTTG 379341 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || || ||||||||||| || | ||||||||| | | || ||||||||| Sbjct 379361 AGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTTCTTCCATCT 379420 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || ||||| || | | ||||| || ||| |||||||||| || Sbjct 379421 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCT 379480 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| || || ||||| ||| || | | ||| || ||||| ||||| || Sbjct 379481 TGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACCTCCAAAGTGATGGTT 379540 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || ||||| || || Sbjct 379541 TTACCAGTAAGGGTCTTTACAAAGATCTG 379569 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| || || || ||||||||||| | ||||||||| | | || || |||||| Sbjct 322016 AGTACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTTCTACCATCT 322075 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || ||||| || | | ||||| || || |||||||||| || Sbjct 322076 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCT 322135 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| || || ||||| ||| || | | ||| || || || ||||| || Sbjct 322136 TGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACCTCTAAAGTGATGGTT 322195 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || ||||| || || Sbjct 322196 TTACCAGTAAGGGTCTTTACAAAGATCTG 322224 >seq4946 Length=1295357 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || || || |||||||||||||| || || ||| |||| |||||| ||||||| Sbjct 125745 ATCTTTGCTGGTAAACAGTTGGAAGATGGCAGAACATTGTCCGACTACAACATCCAGAAG 125804 Query 200998 GAGTCTACTCTTCACCTTGT 201017 |||||||| ||||| ||||| Sbjct 125805 GAGTCTACCCTTCATCTTGT 125824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177929779889354