Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq13065 104 2e-17 seq63207 93.3 4e-14 >seq13065 Length=295510 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || || || || || || | || || || | | Sbjct 164090 ATGCAAATTTTCGTGAAAACACTTACTGGAAAGACAATTACACTTGAGGTTGAACCATCA 164149 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| |||||||| ||||||||| | || || Sbjct 164150 GACACCATTGAAAATGTAAAGGCTAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 164209 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | || || ||||| || || || | || || | ||||||||| Sbjct 164210 CAACGTCTCATCTTTGCCGGTAAACAACTTGAAGATGGCCGTACTTTGTCAGACTACAAC 164269 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || ||| |||| || ||||| || ||||||||||||| || Sbjct 164270 ATTCAGAAAGAATCGACCCTCCATTTAGTCTTGCGTTTGAGAGGAGG 164316 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| ||||| || || |||||||| | || || || | | Sbjct 163634 ATGCAGATCTTTGTGAAAACACTCACAGGAAAGACCATCACTTTGGAGGTTGAACCTTCA 163693 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | ||||||| |||||||| ||||||||| | || || Sbjct 163694 GACACCATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGAATTCCCCCAGATCAG 163753 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | || || || || || || || | || || | |||||||| Sbjct 163754 CAACGTCTCATCTTTGCCGGTAAGCAACTTGAAGATGGCCGTACTTTGTCAGACTACAAT 163813 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || ||| | || || ||||| || ||||||||||||| || Sbjct 163814 ATTCAGAAAGAATCAACCCTCCATTTAGTCTTGCGTTTGAGAGGAGG 163860 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || || || || || || | || || || | | Sbjct 163862 ATGCAAATTTTCGTGAAAACACTTACTGGAAAGACAATTACACTTGAGGTTGAACCATCA 163921 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| ||||| || ||||||||| | || || Sbjct 163922 GACACCATTGAAAATGTAAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 163981 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || ||||| | || || ||||| || || || | || || | |||||||| Sbjct 163982 CAACGTCTCATCTTTGCCGGTAAACAACTTGAAGATGGTCGTACTTTGTCAGACTACAAT 164041 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || || ||| | || || ||||| || ||||||||||||| || Sbjct 164042 ATTCAGAAAGAATCAACCCTCCATTTAGTCTTGCGTTTGAGAGGAGG 164088 >seq63207 Length=555540 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 38235 TTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTC 38294 ||| | | |||||| || || ||||| || || || || ||||||||||| | || || Sbjct 379581 TTTCAGACAATGCAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCACTTTGGAGGTG 379522 Query 38295 GAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCC 38354 || | | || | | | ||| | |||| || || | |||||||| |||||||| Sbjct 379521 GAACCTTCTGATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCT 379462 Query 38355 GCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC 38414 | || || || | | |||| ||| || ||||| || || || | | |||||| Sbjct 379461 CCAGATCAGCAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCA 379402 Query 38415 GACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| || ||||| |||| || ||| | || || ||| | ||||| || Sbjct 379401 GACTACAACATTCAGAAGGAGTCGACACTTCATCTTGTACTCCGTCTTAGAGGAGG 379346 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || ||||| || || || || ||||||||||| | || || || | | Sbjct 322227 ATGCAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCACTTTAGAGGTGGAACCTTCT 322168 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | ||| | |||| || || | |||||||| |||||||| | || || Sbjct 322167 GATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAG 322108 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || | | |||| ||| || ||||| || || || | | |||||| ||||||||| Sbjct 322107 CAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGTAGAACCCTCTCGGACTACAAC 322048 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || |||||||| | || || ||| | || || ||| | ||||| || Sbjct 322047 ATTCAAAAGGAGTCAACACTTCATCTTGTACTCCGTCTTAGAGGAGG 322001 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || ||||| | || || ||||| ||||| | || || || | | Sbjct 379116 ATGCAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCA 379057 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | |||| || || | |||||||| |||||||| | || || Sbjct 379056 GACACAATTGAAAACG-TCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCA 378998 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | | |||| ||| || ||||| || || || | | || ||| |||||||| Sbjct 378997 GCAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACGCTCTCTGACTACAA 378938 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| | || || ||| | || || ||| | ||||| || Sbjct 378937 CATTCAGAAGGAGTCAACACTTCATCTTGTACTCCGTCTTAGAGGAGG 378890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499762270670080