Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq63207 165 2e-35 seq13065 145 2e-29 >seq63207 Length=555540 Score = 165 bits (182), Expect = 2e-35 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || ||||| || ||||| ||||| || | || ||||| |||||||| Sbjct 378908 ACAAGATGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCTTCCATCTTCA 378967 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || ||||| ||||| || | || ||| || ||||||||||| ||||||||||||||| Sbjct 378968 AGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGA 379027 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||| ||||| ||||| || ||| || ||||| || | || || Sbjct 379028 ATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTGATAGTTTTA 379087 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||||||| || || | |||||| Sbjct 379088 CCGGTCAAAGTTTTGACAAATATTTGCAT 379116 Score = 156 bits (172), Expect = 9e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || ||||| || ||||| || || || | || ||||| |||||||| Sbjct 379136 ACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAGAGGGTTCTTCCATCTTCA 379195 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || ||||| ||||| || | || ||| || ||||||||||| ||||||||||||||| Sbjct 379196 AGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGA 379255 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||| ||||| | ||| || ||| || ||||| || | || || Sbjct 379256 ATCTTGGCTTTGACGTTTTCAATTGAGTCTGATGGTTCTACCTCAAGTGTGATAGTTTTA 379315 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||||||| || || | |||||| Sbjct 379316 CCGGTCAAAGTTTTGACAAATATTTGCAT 379344 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || ||||| || ||||| || || || | || || || |||||||| Sbjct 378680 ACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAGAGGGTCCTTCCATCTTCA 378739 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || ||||| || || || | || ||| || ||||| ||||| ||||||||||||||| Sbjct 378740 AGTTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGA 378799 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||||| ||||| ||||| || ||| || ||||| || | || || Sbjct 378800 ATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTGATAGTTTTA 378859 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||||||||| || || | |||||| Sbjct 378860 CCTGTCAAAGTTTTGACAAATATTTGCAT 378888 Score = 140 bits (154), Expect = 7e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || ||||| || ||||| ||||| || | || ||||| |||||||| Sbjct 379364 ACAAGATGAAGTGTCGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTTCTTCCATCTTCA 379423 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || ||||| ||||| || | || ||| || ||||||||||| ||||||||||||||| Sbjct 379424 AGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGA 379483 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| || || ||||| || ||| |||||| || | || | || || Sbjct 379484 ATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACCTCCAAAGTGATGGTTTTA 379543 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || | || ||||| || | |||||| Sbjct 379544 CCAGTAAGGGTCTTTACAAAGATCTGCATT 379573 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| || ||||| |||||||| ||||| || | || ||||| |||||||| Sbjct 322019 ACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTTCTACCATCTTCA 322078 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || || ||||| ||||| || | || ||| || ||||| ||||| ||||||||||||||| Sbjct 322079 AGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGA 322138 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| || || ||||| || ||| |||||| || | || | || || Sbjct 322139 ATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACCTCTAAAGTGATGGTTTTA 322198 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || ||||| || | ||||| Sbjct 322199 CCAGTAAGGGTCTTTACAAAGATCTGCAT 322227 Score = 105 bits (116), Expect = 1e-17 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| ||||| | ||||| || ||||| || || || | || ||| ||| || Sbjct 321551 ACAAGATGAAGTATCGACTCCTTCTGAATGTTATAGTCCGAGAGGATTC---CATATTGA 321607 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || |||||||| ||||| | | || ||| || |||| ||||| ||||||||||||||| Sbjct 321608 AGTTGCTTACCAGCGAAAAGCAATCTTTGCTGATCTGATGGAATTCCTTCTTTGTCTTGA 321667 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| || ||||| ||||| | ||| || |||| || | || || Sbjct 321668 ATCTTGGCTTTGACATTTTCAATTGTGTCTGCTGGTTCTACCGCAAGTGTGATAGTTTTA 321727 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||||||||| | || | |||||| Sbjct 321728 CCGGTCAAAGTTTTGATAAATATTTGCAT 321756 >seq13065 Length=295510 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || ||||| ||||||||||| || | | ||| | |||||||| || ||| Sbjct 163836 TGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGACAAAGTACGGCCATCTTCAAGTTGC 163777 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| || ||||| || ||||| ||||| |||||||||||||| ||||| Sbjct 163776 TTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTCTTGGATTTTA 163717 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || ||||||||||| ||| ||| || || | || | ||||||||||| Sbjct 163716 GCCTTTACATTTTCAATGGTGTCTGAAGGTTCAACCTCCAAAGTGATGGTCTTTCCTGTG 163657 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| Sbjct 163656 AGTGTTTTCACAAAGATCTGCAT 163634 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || ||||| ||||||||||| || | | ||| | |||||||| || || Sbjct 164064 TGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGACAAAGTACGACCATCTTCAAGTTGT 164005 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| || ||||| || ||||| ||||| ||||| ||||| || || || Sbjct 164004 TTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTA 163945 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || ||||||||||| || ||| || ||||| |||| |||||||| || Sbjct 163944 GCCTTTACATTTTCAATGGTGTCTGATGGTTCAACCTCAAGTGTAATTGTCTTTCCAGTA 163885 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | |||||| Sbjct 163884 AGTGTTTTCACGAAAATTTGCAT 163862 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || ||||| ||||| ||||| || | | ||| | |||||||| || || Sbjct 164292 TGGAGGGTCGATTCTTTCTGAATGTTGTAGTCTGACAAAGTACGGCCATCTTCAAGTTGT 164233 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| || ||||| || ||||| || ||||| ||||| ||||||||||| || || || Sbjct 164232 TTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTA 164173 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || ||||||||||| || ||| || ||||| |||| |||||||| || Sbjct 164172 GCCTTTACATTTTCAATGGTGTCTGATGGTTCAACCTCAAGTGTAATTGTCTTTCCAGTA 164113 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||||| ||||| | |||||| Sbjct 164112 AGTGTTTTCACGAAAATTTGCAT 164090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108548199370754