Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq63207 96.9 2e-15 seq13065 84.2 1e-11 >seq63207 Length=555540 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || ||| ||| | |||| || || ||||| || || || Sbjct 379382 TCCTTCTGAATGTTGTAGTCTGAGAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAA 379441 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||| ||| | || | || || ||||| |||||| |||||| | Sbjct 379442 ATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACATTT 379501 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | || || || | || |||||||| || || || ||||| ||| Sbjct 379502 TCGATGGTATCAGAAGGTTCCACCTCCAAAGTGATGGTTTTACCAGTAAGGGTCTTTACA 379561 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 379562 AAGATCTGCAT 379572 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| |||||||| ||| ||| |||| || || ||||| || || || Sbjct 322037 TCCTTTTGAATGTTGTAGTCCGAGAGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAA 322096 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||| ||| | || | || || ||||| |||||| |||||| | Sbjct 322097 ATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACATTT 322156 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | || || || | || |||||||| || || || ||||| ||| Sbjct 322157 TCGATGGTATCAGAAGGTTCCACCTCTAAAGTGATGGTTTTACCAGTAAGGGTCTTTACA 322216 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 322217 AAGATCTGCAT 322227 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||||||||| || ||| ||| | |||| || || ||||| || || || Sbjct 379154 TCCTTCTGAATGTTATAGTCTGAGAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAA 379213 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||| ||| | || | || || ||||| |||||| ||||||| | Sbjct 379214 ATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTT 379273 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || || || | || || || | || || ||||| || || | ||| || ||| Sbjct 379274 TCAATTGAGTCTGATGGTTCTACCTCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACA 379333 Query 34971 AAGATCTGCATA 34982 || || |||||| Sbjct 379334 AATATTTGCATA 379345 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||||||||| || ||| | | | |||| || || ||||| || ||||| Sbjct 378698 TCCTTCTGAATGTTATAGTCTGAGAGGGTCCTTCCATCTTCAAGTTGTTTACCAGCAAAA 378757 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || |||||| ||| | || | || || ||||| |||||| ||||||| | Sbjct 378758 ATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTT 378817 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || || || | || || ||||| || || | ||| || ||| Sbjct 378818 TCAATTGTGTCTGATGGTTCTACCTCAAGTGTGATAGTTTTACCTGTCAAAGTTTTGACA 378877 Query 34971 AAGATCTGCATA 34982 || || |||||| Sbjct 378878 AATATTTGCATA 378889 >seq13065 Length=295510 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| ||||| | ||| || || || | || ||||||||||||||| ||||| || Sbjct 164317 TCCTCCTCTCAAACGCAAGACTAAATGGAGGGTCGATTCTTTCTGAATGTTGTAGTCTGA 164258 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 | | || |||| || || ||||| |||||||| || || |||||||| ||| | || Sbjct 164257 CAAAGTACGGCCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGG 164198 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || || ||||| ||||| || || | | || | || | ||||| Sbjct 164197 AATTCCTTCTTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAAC 164138 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | || || || ||||| || || || ||||| || || |||||| Sbjct 164137 CTCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCATA 164089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324373810135536