Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq45842 174 2e-38 seq63864 96.9 4e-15 >seq45842 Length=221613 Score = 174 bits (192), Expect = 2e-38 Identities = 174/226 (77%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||||||| || | ||||| || || | ||||||||| | ||||||||| | Sbjct 80242 CCTCATCTCTACTGATAAGCTCATTGCTGAAAGTAAGACCAGGCATAATTCCTCTTTTCT 80301 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | |||||| |||| ||||| ||||| || || || ||||||||||||||||||| Sbjct 80302 TCAGCCAGAAAATAGCTGCAAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAAAG 80361 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 | || | ||| ||| |||| |||| | | | || |||||||| | |||||||| | Sbjct 80362 CTACAACTCTCTCTGCATATGCTGCATTACTTTCATTGATCCATTTAATGGCCCAATCTG 80421 Query 19163 CCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 |||| | ||||||||||||||||||||| |||| |||||| ||||| Sbjct 80422 CCTTTTCTTTTACACATGGCATTGTCTCAATAGCATTAAACAGATA 80467 Score = 122 bits (134), Expect = 1e-22 Identities = 154/207 (74%), Gaps = 10/207 (5%) Strand=Plus/Plus Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 ||||| |||||||| || ||||||||||||||||||||||| || | | |||| || Sbjct 81551 ACCAAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGATATG 81610 Query 19405 AAATGT---TTTTCATCTGAGGTTAATGTATT-CCAAT-CATTAATATCTTTAGATAAAT 19459 |||||| | ||||||| || | || || ||||| | ||| |||||| || |||| Sbjct 81611 AAATGTCGCTCTTCATCT----TTCAGGTTTTCCCAATGCCCTAA-ATCTTTTGACAAAT 81665 Query 19460 CTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCAC 19519 | ||||| || | ||||| || || || |||||||| || ||||| | ||| || ||| Sbjct 81666 CAACTTCCTCTGCAGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATCTGCCAGATGTCAT 81725 Query 19520 GATATTGTATAGGAAATATAACAAATC 19546 | || || || || || | |||||||| Sbjct 81726 GGTACTGAATGGGGAAGACAACAAATC 81752 Score = 100 bits (110), Expect = 3e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 |||||| ||||| || |||||||| ||||||| || ||||| || || || ||||| || Sbjct 76802 CATTACACCCATCTTCTGATATTCTCCAACTCTCTTCTCAAAAAAGTTTGTCTTTCCTTC 76861 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAT 18764 ||||||||| |||||| || ||||| ||||||| |||||| || || Sbjct 76862 TAATGATATCTGTTCCATGAAGTCAAAAGGATTTTCTACATTGTAAAT 76909 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 ||||| | || | ||| || | ||| || |||||||| |||||||| || || || || Sbjct 80941 TCTTTGATGTAGGTATCAATGAGTAAGCTATACATTTCAGAATGAATGTTCTCCATGGCA 81000 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||| || || ||||||||||| |||||||| ||||||||| Sbjct 81001 ATCTGGAAACCATAAAAACATCTGGCTTCTGTAGCCTGTACTTC 81044 >seq63864 Length=1411193 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| ||||||||||||| || |||||||| ||| | || || | ||||| |||| Sbjct 1050493 TCCAAGCATAGAAATGCATGCTGGTTAATTTGCCATAGTTTGGCTCGGCTATATGTATAT 1050552 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | ||||| |||||||| ||||| ||||| |||||||| || ||||| | | | | | Sbjct 1050553 TTAGAGACTGACTCTGGTCAATGAATGCTCCTCTATCGGCAGCCATCTTGATCACAGTCT 1050612 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220 | || | |||||||| || ||| | |||| || || | | ||||||| Sbjct 1050613 TCTGGGAGATCTCCCACACAGTTCTGTAAAGTTTCTTCAGATTGTCTGGGA 1050663 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 || ||||| || || | |||||| | | || || |||||||| || | |||||||| Sbjct 1055910 TGGAATTCACCTGACAATACTCTTCTAGTGTAGATGTTACTTGTGTAGGCCTCTATAGAC 1055969 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 || |||||||||| |||||||| || || ||||||||||| | || | |||||||| Sbjct 1055970 TCGTTATTTCCAAGGATTTGAGCTGTGGAAGCTGTAGGCATAGGAGCTAACAATAAGCTG 1056029 Query 47448 TTTCTTACTCCAT 47460 ||||||| |||| Sbjct 1056030 TTTCTTATACCAT 1056042 Score = 96.9 bits (106), Expect = 4e-15 Identities = 80/97 (82%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 48570 AGAAAACAA--CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATG 48627 ||||||||| ||||||||||| ||| |||||||||||| ||| || |||||||| |||| Sbjct 1075673 AGAAAACAAACCTAGACATTTGGGGACGACAAGTTCCTGCATTGAACAATGTTGGTGATG 1075732 Query 48628 CATGAATAAACCATTTCTCTGATAACAATTTATATGT 48664 | || |||||||| | ||||| | || |||||||| Sbjct 1075733 CGTGTGTAAACCATCTTTCTGACAGCAGGTTATATGT 1075769 Score = 82.4 bits (90), Expect = 9e-11 Identities = 171/247 (69%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 48108 TATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT-CTAACCCAGGACATTC 48166 || || || || | |||||||||||| || || | || | | | | ||||||||||| Sbjct 1069182 TACTTTGTGTACAGCTTCTCAAATTCCTCTCCCCAG-CAGTCTGCCAGTCCAGGACATTC 1069240 Query 48167 ATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGG 48226 || || |||| ||| | ||| || ||| | | ||| | |||| || | ||||| Sbjct 1069241 ATGTGGGCACAGCAAGGTCCACTCTCCATTGCTCTCTACACGTTTCATGAACAAGTCTGG 1069300 Query 48227 TATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT-T 48284 ||||| | ||| ||| || | |||||| | ||| |||||| || || | || | | Sbjct 1069301 AATCCACATAGC-ATAGAACAGATCCCTGGCTCTAGATTCTTCTTTACCTGTGTTTTTCT 1069359 Query 48285 TTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACA 48344 | ||| |||||| || | ||||||||||||||||||||| | || || || | | Sbjct 1069360 TGCAGTCTAAGAAA-TCAAATATATCAGCATGCCATGGTTCCAGGTACATAGCAAAAGCC 1069418 Query 48345 CCTGGTC 48351 ||||||| Sbjct 1069419 CCTGGTC 1069425 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 |||||||| ||||| |||| ||||||||| || |||||||| ||||| ||||| || | Sbjct 1071455 TTATTACCACCTTGGTCTACATATCTGGCTGTGTTGTTATATACTCTCAACATAGGCAAC 1071514 Query 48414 ATACCATTTGATATACCATTGGT 48436 | ||||| ||||||||||| || Sbjct 1071515 AGTCCATTAGATATACCATTTGT 1071537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561647435149680