Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1240 113 5e-20 seq45842 107 2e-18 >seq1240 Length=244183 Score = 113 bits (124), Expect = 5e-20 Identities = 210/303 (69%), Gaps = 8/303 (3%) Strand=Plus/Plus Query 142541 GGAGGGATAATGTCTATATTTCTTATGGGTTGTTATGATGAAGATACAAATACATGGAAA 142600 || || || ||||| |||||| | |||| ||||||| | ||||||| | || Sbjct 100126 GGTGGAATCATGTCCATATTTTTGTTGGGAGCTTATGATCCACATACAAAGAAATTTTGT 100185 Query 142601 ACTGTTACAAAATGTT-CAG--GATTCAATGATGAAACATTAAAGGAATTACAGTCAA-- 142655 ||||| ||||||||| ||| |||| | || | | | | |||||||||| || Sbjct 100186 ACTGTAACAAAATGTGGCAGTGGATTTGACGACAAGAGACTGGAGGAATTACAAACAGAA 100245 Query 142656 -TTGATATGATAAAAATCAGTAAAAATAAAGATAAAATACCAACATGGTTAAATATTAAC 142714 | ||| | |||||||| |||||| || | |||| | |||| |||||||| ||||| Sbjct 100246 CTCGATGTCATAAAAATAAGTAAAGATCAGTCTAAAGTCCCAAGCTGGTTAAACATTAAA 100305 Query 142715 A-GTATACATTATCCAGATTTTATTGTTAATAATCCAAAAACATCACCTGTTTGGGAAAT 142773 | | || | | |||||| ||| | || | ||||||| | | || |||||||||| Sbjct 100306 AAGCAT-CTTGTTCCAGACTTTGTCGTCAGAGATCCAAAGATTGCTCCGATTTGGGAAAT 100364 Query 142774 ATCCGGATATGAATTTACAAAATCACCATCTCATACAGCAGATGGGATATCTATTAGATT 142833 | ||| ||||||| ||| || | |||||| || ||||||||||| || ||||| Sbjct 100365 AATGGGAGCAGAATTTAGTAAAGCAGAAGTTCATACGGCTGATGGGATATCCATAAGATT 100424 Query 142834 TCC 142836 ||| Sbjct 100425 TCC 100427 >seq45842 Length=221613 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||||| || | ||||| || || | || ||||| | |||||||| || Sbjct 80244 TCATCTCTACTGATAAGCTCATTGCTGAAAGTAAGACCAGGCATAATTCCTCTTTTCTTC 80303 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| || || ||||||||| ||||| || ||||| ||||| ||||||||||| ||| Sbjct 80304 AGCCAGAAAATAGCTGCAAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAAAGCT 80363 Query 37320 ACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCC 37379 |||| | | | | || | || ||| |||||||| | | |||||||||| Sbjct 80364 ACAACTCTCTCTGCATATGCTGCATTACTTTCATTGATCCATTTAATGGCCCAATCTGCC 80423 Query 37380 TTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGA 37421 ||| ||| |||||| ||||| ||||| || || || ||| Sbjct 80424 TTTTCTTTTACACATGGCATTGTCTCAATAGCATTAAACAGA 80465 Score = 102 bits (112), Expect = 1e-16 Identities = 105/135 (78%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 37563 AAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAA 37622 ||||||||||| || || ||||||||||||||||| || ||||||| || | ||| ||| Sbjct 81554 AAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGATATGAAA 81613 Query 37623 TGTCTTTCATCATTTGATAATTTTTTCCAAT-CATTAATATCTTTTGATAAATCAACTTC 37681 |||| || |||| | | |||| ||||| | ||| ||||||||| ||||||||||| Sbjct 81614 TGTCGCTCTTCATCTTTCAGGTTTTCCCAATGCCCTAA-ATCTTTTGACAAATCAACTTC 81672 Query 37682 ATCAACGGTCCAAAA 37696 || | ||||| || Sbjct 81673 CTCTGCAGTCCAGAA 81687 Score = 100 bits (110), Expect = 3e-16 Identities = 80/94 (85%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| || ||||| || |||||||||||||||| |||| || ||||| ||||||||||||| Sbjct 76802 CATTACACCCATCTTCTGATATTCTCCAACTC-TCTTCTCAAAAAAGTTTGTCTTTCCTT 76860 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 ||| |||||| | |||||| || ||||| ||||| Sbjct 76861 CTAATGATATCTGTTCCATGAAGTCAAAAGGATT 76894 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/89 (83%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 37440 TCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCT 37499 ||| | || || |||||||| ||||| |||||||||||||| ||||| || || || || Sbjct 80941 TCTTTGATGTAGGTATCAATGAGTAAGCTATACATTTCAGAATGAATGTTCTCCATGGCA 81000 Query 37500 ATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||||| |||||||||||||| || ||||| Sbjct 81001 ATCTGGAAACCATAAAAACATCTGGCTTC 81029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591830641178480