Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq13065 95.1 9e-15 >seq13065 Length=295510 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| || ||||| || || ||||| ||||||||||| || || | | | ||| | Sbjct 164076 CGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGACAAAGTACGACCA 164017 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | || ||||||||||| || || || || ||||| | ||||| || |||||| Sbjct 164016 TCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTG 163957 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||| |||||| | | | ||||| | || ||||| | ||||| Sbjct 163956 TCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAACCTCAAGTGTAATT 163897 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || | ||||| || ||||| ||||| Sbjct 163896 GTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCAT 163862 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| || ||||| || || ||||| ||||||||||| || || | | | || | Sbjct 163848 CGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGACAAAGTACGGCCA 163789 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | |||||||||||||| || || || || ||||| | ||||| || || ||| Sbjct 163788 TCTTCAAGTTGCTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTG 163729 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || || || |||||| | | | ||||| | || ||||||| || || Sbjct 163728 TCTTGGATTTTAGCCTTTACATTTTCAATGGTGTCTGAAGGTTCAACCTCCAAAGTGATG 163669 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||||| || | ||||| ||||| ||||||||| Sbjct 163668 GTCTTTCCTGTGAGTGTTTTCACAAAGATCTGCATC 163633 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 ||||| || ||||| || || ||||| ||||| ||||| || || | | | || | Sbjct 164304 CGCAAGACTAAATGGAGGGTCGATTCTTTCTGAATGTTGTAGTCTGACAAAGTACGGCCA 164245 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | || ||||||||||| || || || || ||||| | ||||| || || ||| Sbjct 164244 TCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTG 164185 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||| |||||| | | | ||||| | || ||||| | ||||| Sbjct 164184 TCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAACCTCAAGTGTAATT 164125 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || | ||||| || ||||| ||||| Sbjct 164124 GTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCAT 164090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380632752542826