Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq63207 156 8e-33 seq13065 125 1e-23 >seq63207 Length=555540 Score = 156 bits (172), Expect = 8e-33 Identities = 176/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| ||||| | || ||||| ||||| | ||| | ||| || ||| || Sbjct 378881 ATTTGCATACCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTG 378940 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | |||||| ||| || | |||||| || || ||||| ||||| || ||| Sbjct 378941 TAGTCAGAGAGCGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGA 379000 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| ||||||||||| ||||| || |||| ||| | ||| ||| || || || Sbjct 379001 TCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGAT 379060 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || || || ||||||||||| || | ||||| |||||||||||||| Sbjct 379061 GGTTCTACCTCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379116 Score = 152 bits (168), Expect = 9e-32 Identities = 182/247 (74%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGG 193191 |||| ||||| | || ||||| ||||| | ||| | ||| || ||| || ||||| | Sbjct 321999 TACCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCCG 322058 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 | | |||||| ||| || | |||||| || || ||||| ||||| || ||||| || | Sbjct 322059 AGAGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTG 322118 Query 193252 GTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAA 193311 | ||||||||||| ||||| || |||| ||| | |||| || ||||| |||| || | Sbjct 322119 GAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCA 322178 Query 193312 CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGTAA 193371 | |||| ||| || |||||||| || || || |||||||| || ||||| | | | || Sbjct 322179 CCTCTAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCATCGTCTGAAAAA 322238 Query 193372 AATAATT 193378 || |||| Sbjct 322239 AAAAATT 322245 Score = 152 bits (168), Expect = 9e-32 Identities = 176/237 (74%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| ||||| | || ||||| ||||| | ||| | ||| || ||| || Sbjct 379337 ATTTGCATACCTCCTCTAAGACGGAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTG 379396 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | ||||| ||| || | |||||| || || ||||| ||||| || ||| Sbjct 379397 TAGTCTGAGAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGA 379456 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| ||||||||||| ||||| || |||| ||| | |||| || ||||| ||| Sbjct 379457 TCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAA 379516 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | || || || | ||| || |||||||| || || || |||||||| || |||||| Sbjct 379517 GGTTCCACCTCCAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCATT 379573 Score = 150 bits (166), Expect = 3e-31 Identities = 175/236 (74%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| ||||| | || ||||| ||||| | ||| | ||| || ||| ||| Sbjct 379109 ATTTGCATACCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTA 379168 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | ||||| ||| || | |||||| || || ||||| ||||| || ||| Sbjct 379169 TAGTCTGAGAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGA 379228 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| ||||||||||| ||||| || |||| ||| | ||| ||| | || || Sbjct 379229 TCTGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGAGTCTGAT 379288 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || || || ||||||||||| || | ||||| |||||||||||||| Sbjct 379289 GGTTCTACCTCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379344 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| | || || ||||| ||||| | ||| | ||| || ||| |||||||| || Sbjct 378662 CCACCACGTAAACGCAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAG 378721 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || || ||| || | |||||| || |||||||| ||||| || ||||| || || Sbjct 378722 AGGGTCCTTCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGTGGA 378781 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 ||||||||||| ||||| || |||| ||| | ||| ||| || || || | || || Sbjct 378782 ATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACC 378841 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || |||||||||||||| | ||||| |||||||||||||| Sbjct 378842 TCAAGTGTGATAGTTTTACCTGTCAAAGTTTTGACAAATATTTGCAT 378888 Score = 120 bits (132), Expect = 5e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| ||| | | | ||||| ||||| | ||| | ||| || ||| ||| Sbjct 321749 ATTTGCATACCTCCTGTAAGATGTAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTA 321808 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | |||||| ||| || | |||||| || || ||||| ||||| || ||| Sbjct 321809 TAGTCTGAGAGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGA 321868 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||||||||| | || | ||| | |||| ||| | || || Sbjct 321869 TCTGGTGGGATTCCTTCTTTATCTTGAAGCTTAGATTTGACATTTTCAATTGCGTCTGAT 321928 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTT 193343 | || || || || || ||||||||||| || | |||| Sbjct 321929 GGTTCTACCTCAAGTGTGATAGTTTTACCGGTCAACGTT 321967 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || ||||| ||||| | | | | ||| || ||| |||||||| || | ||| | | Sbjct 321545 CGCAGTACAAGATGAAGTATCGACTCCTTCTGAATGTTATAGTCCGAGAGGATTCCATAT 321604 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 | | ||| || || || |||| ||||| || ||||| | || ||||||||||| Sbjct 321605 TGA---AGTTGCTTACCAGCGAAAAGCAATCTTTGCTGATCTGATGGAATTCCTTCTTTG 321661 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| ||| | |||| ||| || || | | || || | || || ||| Sbjct 321662 TCTTGAATCTTGGCTTTGACATTTTCAATTGTGTCTGCTGGTTCTACCGCAAGTGTGATA 321721 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || | ||||| | |||||||||||| Sbjct 321722 GTTTTACCGGTCAAAGTTTTGATAAATATTTGCAT 321756 >seq13065 Length=295510 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||| |||||||| || | || | ||| | || | ||||| |||||| Sbjct 163870 AATTTGCATACCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATT 163811 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 ||||| || || || | ||| || | ||| || |||||||| || | | || || Sbjct 163810 GTAGTCTGACAAAGTACGGCCATCTTCAAGTTGCTTACCGGCAAAGATGAGACGTTGCTG 163751 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || ||||||||||| ||||| ||||| | |||| |||| ||| || || || Sbjct 163750 ATCTGGGGGAATTCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATGGTGTCTGA 163691 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || | ||| || || || ||||| || ||||| ||||| || ||||| Sbjct 163690 AGGTTCAACCTCCAAAGTGATGGTCTTTCCTGTGAGTGTTTTCACAAAGATCTGCAT 163634 Score = 100 bits (110), Expect = 5e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 ||||| || |||||||| || | || | ||| | || | ||||| ||| || | Sbjct 164324 TTTATTGTCCTCCTCTCAAACGCAAGACTAAATGGAGGGTCGATTCTTTCTGAATGTTGT 164265 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 |||| || || || | ||| || | |||||| |||||||| || | | || |||| Sbjct 164264 AGTCTGACAAAGTACGGCCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGAT 164205 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 | || || ||||||||||| || || || || | |||| |||| ||| || || || | Sbjct 164204 CTGGGGGAATTCCTTCTTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATG 164145 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || || || || || || || || ||||| || || |||||||| Sbjct 164144 GTTCAACCTCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCAT 164090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898915986159840