Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq63207 129 9e-25 seq13065 123 4e-23 >seq63207 Length=555540 Score = 129 bits (142), Expect = 9e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| ||||| || |||||||| ||| | || || ||| || Sbjct 378888 ATGCAAATATTTGTCAAAACTTTGACAGGTAAAACTATCACACTTGAGGTAGAACCATCA 378829 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| ||| || || ||||| |||||||| || || ||||| || Sbjct 378828 GACACAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAG 378769 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| ||||| || || |||||| || || | ||||| ||||| Sbjct 378768 CAAAGATTGATTTTTGCTGGTAAACAACTTGAAGATGGAAGGACCCTCTCAGACTATAAC 378709 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| | || |||||| Sbjct 378708 ATTCAGAAGGAGTCAACACTTCAT 378685 Score = 129 bits (142), Expect = 9e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| ||||| || |||||||| ||| | || || ||| || Sbjct 379344 ATGCAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCA 379285 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || ||| |||||| ||| || || ||||| |||||||| || |||||||| || Sbjct 379284 GACTCAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 379225 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| || ||||| || || |||||| ||||| | ||||| ||||| Sbjct 379224 CAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCAGACTATAAC 379165 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| | || |||||| Sbjct 379164 ATTCAGAAGGAGTCAACACTTCAT 379141 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | ||||| ||||| || |||||||| ||| | || || ||| || Sbjct 379116 ATGCAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCA 379057 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| ||| || || ||||| |||||||| || |||||||| || Sbjct 379056 GACACAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 378997 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| || ||||| || || |||||| ||||| | || || || || Sbjct 378996 CAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACGCTCTCTGACTACAAC 378937 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| | || |||||| Sbjct 378936 ATTCAGAAGGAGTCAACACTTCAT 378913 Score = 118 bits (130), Expect = 2e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 |||||| || ||| | || || | ||||| ||||| || || || || || ||| ||| Sbjct 379573 AATGCAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCACTTTGGAGGTGGAACCTTC 379514 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| || ||| || ||| || || ||||| |||||||| || |||||||| || Sbjct 379513 TGATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCA 379454 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||||||||||| || ||||| || || |||||| ||||| | ||||| || || Sbjct 379453 GCAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCAGACTACAA 379394 Query 156002 TATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| |||| |||||| Sbjct 379393 CATTCAGAAGGAGTCGACACTTCAT 379369 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | ||||| ||||| || || ||||| || ||| |||| Sbjct 322227 ATGCAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCACTTTAGAGGTGGAACCTTCT 322168 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||| || ||| || || ||||| |||||||| || || ||||| || Sbjct 322167 GATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAG 322108 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| || ||||| || || |||||| ||||| | || || || || Sbjct 322107 CAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGTAGAACCCTCTCGGACTACAAC 322048 Query 156003 ATATCCAAA-GAGGCGACGCTTCAT 156026 || || ||| ||| | || |||||| Sbjct 322047 AT-TCAAAAGGAGTCAACACTTCAT 322024 Score = 107 bits (118), Expect = 3e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 155840 AACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGT 155899 ||| ||||| || |||||||| ||| | || || ||| || || ||| ||| || Sbjct 321967 AACGTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCAGACGCAATTGAAAATGT 321908 Query 155900 GAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGC 155959 ||| ||| | |||||||||||||| || || ||||| || ||||||||||||| || Sbjct 321907 CAAATCTAAGCTTCAAGATAAAGAAGGAATCCCACCAGATCAGCAAAGATTGATTTTCGC 321848 Query 155960 CGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGAC 156019 ||||| || || |||||| ||||| | ||||| ||||| || || ||| |||| Sbjct 321847 TGGTAAACAACTTGAAGATGGTAGAACCCTCTCAGACTATAACATTCAGAAGGAGTCGAC 321788 Query 156020 GCTTCAT 156026 |||||| Sbjct 321787 ACTTCAT 321781 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||||| ||||| ||||| || |||||||| ||| | | || ||| | Sbjct 321756 ATGCAAATATTTATCAAAACTTTGACCGGTAAAACTATCACACTTGCGGTAGAACCAGCA 321697 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || ||| || || ||||| |||||||| || || |||| || Sbjct 321696 GACACAATTGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCATCAGATCAG 321637 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCT 155971 ||||||||| ||| || |||||||| || Sbjct 321636 CAAAGATTGCTTTTCGCTGGTAAGCAACT 321608 >seq13065 Length=295510 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||| | || ||||| || || || || || || ||| ||| Sbjct 163634 ATGCAGATCTTTGTGAAAACACTCACAGGAAAGACCATCACTTTGGAGGTTGAACCTTCA 163693 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || |||||| ||||| |||||||| || || ||||| || Sbjct 163694 GACACCATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGAATTCCCCCAGATCAG 163753 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | | || | |||||||||||| || |||||| | | ||||| ||||| || ||| Sbjct 163754 CAACGTCTCATCTTTGCCGGTAAGCAACTTGAAGATGGCCGTACTTTGTCAGACTACAAT 163813 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || || |||||||| || | || ||||| ||| Sbjct 163814 ATTCAGAAAGAATCAACCCTCCATTTAGTCTTGCGTTTGAGAGGAGGT 163861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731271297759200