Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq63207 140 6e-28 seq13065 127 4e-24 seq4946 95.1 2e-14 seq45842 91.5 3e-13 >seq63207 Length=555540 Score = 140 bits (154), Expect = 6e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||||||||| | ||| | ||| | || | ||| || || ||||| || Sbjct 379115 ATACCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCT 379174 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || | |||||||||||| || || ||||| || ||||| || Sbjct 379175 GAGAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGA 379234 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || || ||| || || || || ||||| | |||| Sbjct 379235 GGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGAGTCTGATGGTTCT 379294 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || |||||||| || || ||||| | |||||| ||||| Sbjct 379295 ACCTCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379344 Score = 138 bits (152), Expect = 2e-27 Identities = 178/243 (73%), Gaps = 2/243 (1%) Strand=Plus/Plus Query 192308 TACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCT-CTTTAGAGATATTATAATCA 192366 |||| ||||||||||| | ||| | ||| | || | || |||| || || || || || Sbjct 321999 TACCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTTTGA-ATGTTGTAGTCC 322057 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || | |||||||||||| || || ||||| || ||||| ||| Sbjct 322058 GAGAGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGT 322117 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || || ||| ||||| || | ||| || | ||| Sbjct 322118 GGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCC 322177 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAA 192546 || |||| ||| |||||||||||||| | || || | ||| |||||||| | | | || Sbjct 322178 ACCTCTAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCATCGTCTGAAAA 322237 Query 192547 AAA 192549 ||| Sbjct 322238 AAA 322240 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||||||||| | ||| | ||| | || | ||| || || || || ||| Sbjct 378887 ATACCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTGTAGTCA 378946 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || | |||||||||||| || || ||||| || ||||| || Sbjct 378947 GAGAGCGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGA 379006 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || || ||| || || || | ||||| | |||| Sbjct 379007 GGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCT 379066 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || |||||||| || || ||||| | |||||| ||||| Sbjct 379067 ACCTCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379116 Score = 134 bits (148), Expect = 3e-26 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||||||||| | ||| | ||| | || | ||| || || || || || Sbjct 379343 ATACCTCCTCTAAGACGGAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTGTAGTCT 379402 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| | |||| || | |||||||||||| || || ||||| || ||||| || Sbjct 379403 GAGAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGA 379462 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| || || ||| ||||| || | ||| || | ||| Sbjct 379463 GGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCC 379522 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATTAGAA 192546 || || | ||| |||||||||||||| | || || | ||| ||||||||| | | | || Sbjct 379523 ACCTCCAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCATTGTCTGAAAA 379582 Query 192547 AA 192548 || Sbjct 379583 AA 379584 Score = 123 bits (136), Expect = 5e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||| ||||| ||| ||| | ||| | || | ||| || || ||||| || Sbjct 321755 ATACCTCCTGTAAGATGTAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTATAGTCT 321814 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | |||| |||| || | |||||||||||| || || ||||| || ||||| ||| Sbjct 321815 GAGAGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGT 321874 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| | ||| ||| ||||| || | ||||| | |||| Sbjct 321875 GGGATTCCTTCTTTATCTTGAAGCTTAGATTTGACATTTTCAATTGCGTCTGATGGTTCT 321934 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 192519 || || || || || |||||||| || || ||| Sbjct 321935 ACCTCAAGTGTGATAGTTTTACCGGTCAACGTT 321967 Score = 122 bits (134), Expect = 2e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || ||||| || || | || | | |||| || | ||||||||||||||| || ||||| Sbjct 378707 ATGTTATAGTCTGAGAGGGTCCTTCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTT 378766 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| ||||| ||||||||||| ||||| || || ||| || || || | Sbjct 378767 TGCTGATCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTG 378826 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| | |||||| || || || || |||||||| || || ||||| | |||||| ||| Sbjct 378827 TCTGATGGTTCTACCTCAAGTGTGATAGTTTTACCTGTCAAAGTTTTGACAAATATTTGC 378886 Query 192535 AT 192536 || Sbjct 378887 AT 378888 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 192390 TTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTAT 192449 ||| |||||||| || | ||||| || ||||| | ||| ||||||||||| ||||| || Sbjct 321610 TTGCTTACCAGCGAAAAGCAATCTTTGCTGATCTGATGGAATTCCTTCTTTGTCTTGAAT 321669 Query 192450 TTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACC 192509 || ||| ||||| || | |||| | |||||| | || || || |||||||| Sbjct 321670 CTTGGCTTTGACATTTTCAATTGTGTCTGCTGGTTCTACCGCAAGTGTGATAGTTTTACC 321729 Query 192510 AGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| |||||||| ||||| Sbjct 321730 GGTCAAAGTTTTGATAAATATTTGCAT 321756 >seq13065 Length=295510 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | ||| || |||||||| | || | ||||| ||||| || || Sbjct 163863 ATACCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCT 163804 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || || |||| || | ||| ||||| |||||||| | | || ||||| || Sbjct 163803 GACAAAGTACGGCCATCTTCAAGTTGCTTACCGGCAAAGATGAGACGTTGCTGATCTGGG 163744 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| ||||| |||||| |||||||| || | ||||| | ||| Sbjct 163743 GGAATTCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATGGTGTCTGAAGGTTCA 163684 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| ||||| || || || | |||||| | ||| |||||||| Sbjct 163683 ACCTCCAAAGTGATGGTCTTTCCTGTGAGTGTTTTCACAAAGATCTGCAT 163634 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 || ||||| | ||| || |||||||| | || | ||||| || || || || || Sbjct 164316 CCTCCTCTCAAACGCAAGACTAAATGGAGGGTCGATTCTTTCTGAATGTTGTAGTCTGAC 164257 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || || |||| || | ||||||||| |||||||| | | || ||||| || || Sbjct 164256 AAAGTACGGCCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGA 164197 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||||||||| || || || ||| |||||||| || | ||||| | ||| || Sbjct 164196 ATTCCTTCTTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAACC 164137 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || || ||||| | |||||| | || || ||||| Sbjct 164136 TCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCAT 164090 >seq4946 Length=1295357 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | ||| | |||| ||| || ||| || || || || Sbjct 125843 ACCACCACGGAGACGAAGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 125784 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||||||| |||| ||||| ||||||||||||||||| ||||||||||| ||||| || Sbjct 125783 CAATGTTCTGCCATCTTCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGG 125724 Query 192429 TATTCCT 192435 |||||| Sbjct 125723 AATTCCT 125717 >seq45842 Length=221613 Score = 91.5 bits (100), Expect = 3e-13 Identities = 156/225 (69%), Gaps = 10/225 (4%) Strand=Plus/Plus Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905 |||| || ||| |||| ||||| || ||||| | || ||||| | |||||| || | Sbjct 80242 CCTCATCTCTACTGATAAGCTCATTGCTGAAAGTAAGACCAGGCATAATTCCTCTTTTCT 80301 Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965 | ||||| || || | ||||||||||| ||| || || || || || || ||||| | Sbjct 80302 TCAGCCAGAAAATAGCTGCAAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAAAG 80361 Query 49966 CTATTATTCTTGCTCCAAA-----CATTAATTTATCATCTAATATCCAATTTATAGCCCA 50020 ||| | ||| || || | ||||| || |||| ||||| || || ||||| Sbjct 80362 CTACAACTCTCTCTGCATATGCTGCATTACTT--TCAT---TGATCCATTTAATGGCCCA 80416 Query 50021 ATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAA 50065 |||||| |||| ||| | | | || || | || ||||| ||||| Sbjct 80417 ATCTGCCTTTTCTTTTACACATGGCATTGTCTCAATAGCATTAAA 80461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983651762513700