Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq63207 131 3e-25 seq13065 118 2e-21 seq45842 93.3 8e-14 >seq63207 Length=555540 Score = 131 bits (144), Expect = 3e-25 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| |||||||| || | ||| | ||| | || | ||| || ||| || || ||| Sbjct 379343 ATACCTCCTCTAAGACGGAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTGTAGTCT 379402 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | | || || | |||||||||||| ||||| ||||| || || || || Sbjct 379403 GAGAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGA 379462 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || || ||| ||||| || ||||| || | ||| Sbjct 379463 GGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCC 379522 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAA 172079 || || | ||| |||||||||||||| | || || | || ||||||||| | | | || Sbjct 379523 ACCTCCAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCATTGTCTGAAAA 379582 Query 172080 AA 172081 || Sbjct 379583 AA 379584 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| |||||||| || | ||| | ||| | || | ||| || ||| ||||| ||| Sbjct 379115 ATACCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCT 379174 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | | || || | |||||||||||| ||||| ||||| || || || || Sbjct 379175 GAGAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGA 379234 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || || ||| || || || | ||||| | |||| Sbjct 379235 GGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGAGTCTGATGGTTCT 379294 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || |||||||| || || ||||| | ||||| ||||| Sbjct 379295 ACCTCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379344 Score = 125 bits (138), Expect = 1e-23 Identities = 173/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 171841 TACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTG 171900 |||| |||||||| || | ||| | ||| | || | ||| || ||| || || || | Sbjct 321999 TACCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCCG 322058 Query 171901 ATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTG 171960 | | | || | || || | |||||||||||| ||||| ||||| || || || |||| Sbjct 322059 AGAGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTG 322118 Query 171961 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTA 172020 | ||||||||||| ||||| || || ||| ||||| || ||||| || | ||| | Sbjct 322119 GAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCA 322178 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAAA 172080 | |||| ||| |||||||||||||| | || || | || |||||||| | | | ||| Sbjct 322179 CCTCTAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCATCGTCTGAAAAA 322238 Query 172081 AA 172082 || Sbjct 322239 AA 322240 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| |||||||| || | ||| | ||| | || | ||| || ||| || || || Sbjct 378887 ATACCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTGTAGTCA 378946 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | | || || | |||||||||||| ||||| ||||| || || || || Sbjct 378947 GAGAGCGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGA 379006 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| || || ||| || || || || ||||| | |||| Sbjct 379007 GGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCT 379066 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || |||||||| || || ||||| | ||||| ||||| Sbjct 379067 ACCTCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379116 Score = 118 bits (130), Expect = 2e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||| |||| ||| ||| | ||| | || | ||| || ||| ||||| ||| Sbjct 321755 ATACCTCCTGTAAGATGTAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTATAGTCT 321814 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || | | || | || || | |||||||||||| ||||| ||||| || || || ||| Sbjct 321815 GAGAGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGT 321874 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||||||||| | ||| ||| ||||| || | ||||| | |||| Sbjct 321875 GGGATTCCTTCTTTATCTTGAAGCTTAGATTTGACATTTTCAATTGCGTCTGATGGTTCT 321934 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTT 172052 || || || || || |||||||| || || ||| Sbjct 321935 ACCTCAAGTGTGATAGTTTTACCGGTCAACGTT 321967 Score = 118 bits (130), Expect = 2e-21 Identities = 136/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| ||||| ||||| | | | | | || || | |||||||||||||||||| ||||| Sbjct 378706 AATGTTATAGTCTGAGAGGGTCCTTCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCT 378765 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 || || || ||||| ||||||||||| ||||| || || ||| || || || || Sbjct 378766 TTGCTGATCTGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGT 378825 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||||| | |||||| || || || || |||||||| || || ||||| | ||||| || Sbjct 378826 GTCTGATGGTTCTACCTCAAGTGTGATAGTTTTACCTGTCAAAGTTTTGACAAATATTTG 378885 Query 172067 CAT 172069 ||| Sbjct 378886 CAT 378888 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171923 TTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTAT 171982 ||| |||||||| |||| ||||| || || || | ||| ||||||||||| ||||| || Sbjct 321610 TTGCTTACCAGCGAAAAGCAATCTTTGCTGATCTGATGGAATTCCTTCTTTGTCTTGAAT 321669 Query 171983 TTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACC 172042 || ||| ||||| || || |||| | |||||| | || || || |||||||| Sbjct 321670 CTTGGCTTTGACATTTTCAATTGTGTCTGCTGGTTCTACCGCAAGTGTGATAGTTTTACC 321729 Query 172043 AGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || ||||| ||||| Sbjct 321730 GGTCAAAGTTTTGATAAATATTTGCAT 321756 >seq13065 Length=295510 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || || |||||||| | || | ||||| |||||| || ||| Sbjct 163863 ATACCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCT 163804 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || | || || | ||| ||||| ||||| || | | || || || || Sbjct 163803 GACAAAGTACGGCCATCTTCAAGTTGCTTACCGGCAAAGATGAGACGTTGCTGATCTGGG 163744 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| ||||| |||||| |||||||| || || ||||| | ||| Sbjct 163743 GGAATTCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATGGTGTCTGAAGGTTCA 163684 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | ||| ||||| || || || | |||||| | || |||||||| Sbjct 163683 ACCTCCAAAGTGATGGTCTTTCCTGTGAGTGTTTTCACAAAGATCTGCAT 163634 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || ||||| | || || |||||||| | || | ||||| ||| || || ||||| Sbjct 164316 CCTCCTCTCAAACGCAAGACTAAATGGAGGGTCGATTCTTTCTGAATGTTGTAGTCTGAC 164257 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| || | || || | ||||||||| ||||| || | | || || || || || Sbjct 164256 AAAGTACGGCCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGA 164197 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 ||||||||||| || || || ||| |||||||| || || ||||| | ||| || Sbjct 164196 ATTCCTTCTTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAACC 164137 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || || ||||| | |||||| | ||| || ||||| Sbjct 164136 TCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCAT 164090 >seq45842 Length=221613 Score = 93.3 bits (102), Expect = 8e-14 Identities = 148/211 (70%), Gaps = 10/211 (5%) Strand=Plus/Plus Query 39162 ATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATT 39221 |||| ||||| || ||||| | || ||||| | |||||| || || ||||| || || Sbjct 80256 ATAAGCTCATTGCTGAAAGTAAGACCAGGCATAATTCCTCTTTTCTTCAGCCAGAAAATA 80315 Query 39222 GATGCAAAACTACTAGAAAAGAATATACCCTCCACACACGCAAATGCTATTATTCTTGCT 39281 | ||||||||||| ||| || || || || || || ||||| |||| | ||| || Sbjct 80316 GCTGCAAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAAAGCTACAACTCTCTCT 80375 Query 39282 CCAAA-----CATTAATTTATCATCTAAAATCCAATTTATGGCCCAATCTGCtttttttt 39336 || | ||||| || |||| ||||| || |||||||||||||| |||| || Sbjct 80376 GCATATGCTGCATTACTT--TCAT---TGATCCATTTAATGGCCCAATCTGCCTTTTCTT 80430 Query 39337 tGATAGAAGGTATATTTTCTATAGCTTTAAA 39367 | | | | || || | || ||||| ||||| Sbjct 80431 TTACACATGGCATTGTCTCAATAGCATTAAA 80461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904393086999600