Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq63207 150 2e-31 seq13065 143 2e-29 seq63864 91.5 1e-13 >seq63207 Length=555540 Score = 150 bits (166), Expect = 2e-31 Identities = 159/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | |||||||||||||| || || || |||||| | | Sbjct 379344 ATGCAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCA 379285 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| || | |||| || ||| ||||| ||||||||||||||||| ||||| ||||| Sbjct 379284 GACTCAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 379225 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| || || || ||||| || || ||| |||| | | ||||| |||||| Sbjct 379224 CAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCAGACTATAAC 379165 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||| ||||| || ||||| || |||| Sbjct 379164 ATTCAGAAGGAGTCAACACTTCATCTTG 379137 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | || ||||||||||| || || || |||||| | | Sbjct 378888 ATGCAAATATTTGTCAAAACTTTGACAGGTAAAACTATCACACTTGAGGTAGAACCATCA 378829 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| ||||| ||||||||||||||||| || || ||||| Sbjct 378828 GACACAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAG 378769 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| ||||| || ||||| || || ||| || | | | ||||| |||||| Sbjct 378768 CAAAGATTGATTTTTGCTGGTAAACAACTTGAAGATGGAAGGACCCTCTCAGACTATAAC 378709 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || ||||| || | || |||| || || || || Sbjct 378708 ATTCAGAAGGAGTCAACACTTCATCTTGTACTGCGTTTACGTGGTGG 378662 Score = 141 bits (156), Expect = 8e-29 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | |||||||||||||| || || || |||||| | | Sbjct 379116 ATGCAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCA 379057 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| ||||| ||||||||||||||||| ||||| ||||| Sbjct 379056 GACACAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 378997 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||||| || || || ||||| || || ||| |||| | || || || ||| Sbjct 378996 CAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACGCTCTCTGACTACAAC 378937 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||| ||||| || ||||| || |||| Sbjct 378936 ATTCAGAAGGAGTCAACACTTCATCTTG 378909 Score = 138 bits (152), Expect = 1e-27 Identities = 158/211 (75%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || || || |||||||| || || | || || ||| | Sbjct 379575 ACAATGCAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCACTTTGGAGGTGGAACCT 379516 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | |||| || ||| ||||| ||||||||||||||||| ||||| ||| Sbjct 379515 TCTGATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGAT 379456 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || ||| | ||||| || || || ||||| || || ||| |||| | | ||||| || Sbjct 379455 CAGCAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCAGACTAC 379396 Query 24881 AACATTCAAAAGGAATCGACACTACA-CTTG 24910 |||||||| ||||| |||||||| || |||| Sbjct 379395 AACATTCAGAAGGAGTCGACACTTCATCTTG 379365 Score = 134 bits (148), Expect = 1e-26 Identities = 145/191 (76%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 24721 AACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGT 24780 |||| | |||||||||||||| || || || |||||| | | ||| || | |||| || Sbjct 321967 AACGTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCAGACGCAATTGAAAATGT 321908 Query 24781 AAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGC 24840 ||| ||| | ||||| ||||||||||| || || ||||| ||| | ||||| || || Sbjct 321907 CAAATCTAAGCTTCAAGATAAAGAAGGAATCCCACCAGATCAGCAAAGATTGATTTTCGC 321848 Query 24841 CGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGAC 24900 || ||||| || || ||| |||| | | ||||| ||||||||||| ||||| ||||| Sbjct 321847 TGGTAAACAACTTGAAGATGGTAGAACCCTCTCAGACTATAACATTCAGAAGGAGTCGAC 321788 Query 24901 ACTACA-CTTG 24910 ||| || |||| Sbjct 321787 ACTTCATCTTG 321777 Score = 134 bits (148), Expect = 1e-26 Identities = 157/211 (74%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 ||||||||||||||| | || || || || |||||||| || || | || || ||| | Sbjct 322230 ACGATGCAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCACTTTAGAGGTGGAACCT 322171 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || || | |||| || ||| ||||| ||||||||||||||||| || || ||| Sbjct 322170 TCTGATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAGAT 322111 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || ||| | ||||| || || || ||||| || || ||| |||| | | || || || Sbjct 322110 CAGCAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGTAGAACCCTCTCGGACTAC 322051 Query 24881 AACATTCAAAAGGAATCGACACTACA-CTTG 24910 |||||||||||||| || ||||| || |||| Sbjct 322050 AACATTCAAAAGGAGTCAACACTTCATCTTG 322020 Score = 118 bits (130), Expect = 1e-21 Identities = 152/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||||| ||||| | |||||||||||||| || || | |||||| | | Sbjct 321756 ATGCAAATATTTATCAAAACTTTGACCGGTAAAACTATCACACTTGCGGTAGAACCAGCA 321697 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || ||| ||||| ||||||||||||||||| || | ||||| Sbjct 321696 GACACAATTGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCATCAGATCAG 321637 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | ||| | || || || || || || | || ||| | | || || |||||| Sbjct 321636 CAAAGATTGCTTTTCGCTGGTAAGCAACTTCAATAT---GGAATCCTCTCGGACTATAAC 321580 Query 24884 ATTCAAAAGGAATCGACACTACA-CTTG 24910 ||||| ||||| |||| ||| || |||| Sbjct 321579 ATTCAGAAGGAGTCGATACTTCATCTTG 321552 >seq13065 Length=295510 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || || || || ||||| || || || ||| | | Sbjct 164090 ATGCAAATTTTCGTGAAAACACTTACTGGAAAGACAATTACACTTGAGGTTGAACCATCA 164149 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| ||||| |||||||| |||||||||||||| || || ||||| Sbjct 164150 GACACCATTGAAAATGTAAAGGCTAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 164209 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||||||||| ||||| || || ||| | | ||||||| || ||| Sbjct 164210 CAACGTCTCATCTTTGCCGGTAAACAACTTGAAGATGGCCGTACTTTGTCAGACTACAAC 164269 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || |||||||| || || || || ||||| ||| | ||||| Sbjct 164270 ATTCAGAAAGAATCGACCCTCCATTTAGTCTTGCGTTTGAGAGGAGG 164316 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | ||||| || || || || || || || | || || ||| | | Sbjct 163633 GATGCAGATCTTTGTGAAAACACTCACAGGAAAGACCATCACTTTGGAGGTTGAACCTTC 163692 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| ||||| || |||||||||||||||||||| || || ||||| Sbjct 163693 AGACACCATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGAATTCCCCCAGATCA 163752 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 |||||| | ||||||||||| || || || || ||| | | ||||||| || || Sbjct 163753 GCAACGTCTCATCTTTGCCGGTAAGCAACTTGAAGATGGCCGTACTTTGTCAGACTACAA 163812 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| || || || || || ||||| ||| | ||||| Sbjct 163813 TATTCAGAAAGAATCAACCCTCCATTTAGTCTTGCGTTTGAGAGGAGG 163860 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || || || || ||||| || || || ||| | | Sbjct 163862 ATGCAAATTTTCGTGAAAACACTTACTGGAAAGACAATTACACTTGAGGTTGAACCATCA 163921 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| ||||| |||||||| ||||| |||||||| || || ||||| Sbjct 163922 GACACCATTGAAAATGTAAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 163981 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||||||||| ||||| || || ||| | | ||||||| || || Sbjct 163982 CAACGTCTCATCTTTGCCGGTAAACAACTTGAAGATGGTCGTACTTTGTCAGACTACAAT 164041 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| || || || || || ||||| ||| | ||||| Sbjct 164042 ATTCAGAAAGAATCAACCCTCCATTTAGTCTTGCGTTTGAGAGGAGG 164088 >seq63864 Length=1411193 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 139119 GCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTG 139178 ||| ||||| ||||| || | ||||| |||||||| || || || || | ||||||||| Sbjct 1067853 GCTATATTCTACAATCTCTGTACACAGGTTACTACATTTAATGGTTCCCAGATTTTGTTG 1067912 Query 139179 ATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 ||| || |||||||| ||||||||| | ||| || || || |||||||| ||| Sbjct 1067913 ATTTGACTTGCGGTTACAGTGATCTTTGTATAACATGTAAGGAGTACCAGTTTCTGTTTG 1067972 Query 139239 TGTCTCTATAATG 139251 || || |||||| Sbjct 1067973 TGATTCAATAATG 1067985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449528335297360