Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq63207 172 4e-38 seq13065 131 1e-25 >seq63207 Length=555540 Score = 172 bits (190), Expect = 4e-38 Identities = 171/219 (78%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 |||||||| || | |||||| || || || || ||||||||||| || | | ||| | Sbjct 378671 AAACGCAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAGAGGGTCCTT 378730 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || |||||||| |||||| | ||||||||||||||||| || ||||| || ||| Sbjct 378731 CCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCT 378790 Query 29689 TTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 |||||||| ||| || | |||||| |||| | ||||| || ||||||| ||||| || Sbjct 378791 TTGTCTTG-AATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGT 378849 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || ||||| |||||||| ||||| Sbjct 378850 GATAGTTTTACCTGTCAAAGTTTTGACAAATATTTGCAT 378888 Score = 170 bits (188), Expect = 1e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | ||| || || | |||||| || || || ||||||||||| || |||| Sbjct 322001 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCCGAG 322060 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | | ||| || |||||||| ||||| | ||||||||||||||||| || ||| Sbjct 322061 AGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGA 322120 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| ||| || | ||||||| |||| | || |||||| |||| || Sbjct 322121 ATTCCTTCTTTGTCTTG-AATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCAC 322179 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || ||||| ||||| | ||| || ||||| |||||||| Sbjct 322180 CTCTAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCAT 322227 Score = 161 bits (178), Expect = 8e-35 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | ||| || || | |||||| || || || || ||||||||||| || | Sbjct 379118 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAG 379177 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || |||||||| ||||| | ||||||||||||||||| || ||| Sbjct 379178 AGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGA 379237 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| ||| || | |||||| |||| | | ||| || ||||||| Sbjct 379238 ATTCCTTCTTTGTCTTG-AATCTTGGCTTTGACGTTTTCAATTGAGTCTGATGGTTCTAC 379296 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || |||||||| || || || ||||| |||||||| ||||| Sbjct 379297 CTCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379344 Score = 158 bits (174), Expect = 9e-34 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | ||| || || | |||||| || || || || |||||||| || || | Sbjct 379346 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTGTAGTCTGAG 379405 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || |||||||| ||||| | ||||||||||||||||| || ||| Sbjct 379406 AGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGA 379465 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| ||| || | ||||||| |||| | || |||||| |||| || Sbjct 379466 ATTCCTTCTTTGTCTTG-AATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCAC 379524 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || | ||| || ||||| ||||| | ||| || ||||| ||||||||| Sbjct 379525 CTCCAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCATT 379573 Score = 156 bits (172), Expect = 3e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | ||| || || | |||||| || || || || |||||||| || || | Sbjct 378890 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAG 378949 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | ||| || |||||||| ||||| | ||||||||||||||||| || ||| Sbjct 378950 AGCGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGA 379009 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| ||| || | |||||| |||| | ||||| || ||||||| Sbjct 379010 ATTCCTTCTTTGTCTTG-AATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTAC 379068 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || |||||||| || || || ||||| |||||||| ||||| Sbjct 379069 CTCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379116 Score = 131 bits (144), Expect = 1e-25 Identities = 161/217 (74%), Gaps = 5/217 (2%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 |||||| || | |||||| | || || || ||||||||||| |||| | | | | | | Sbjct 321544 ACGCAGTACAAGATGAAGTATCGACTCCTTCTGAATGTTATAGTCCGAGAGGATTCCATA 321603 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 | | ||||| || ||||| | | ||||||||||||||| | ||||| || ||||| Sbjct 321604 TTGA---AGTTGCTTACCAGCGAAAAGCAATCTTTGCTGATCTGATGGAATTCCTTCTTT 321660 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | ||||||| |||| | ||||| | ||||||| |||| || | Sbjct 321661 GTCTTG-AATCTTGGCTTTGACATTTTCAATTGTGTCTGCTGGTTCTACCGCAAGTGTGA 321719 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||| || || || ||||| | |||||| ||||| Sbjct 321720 TAGTTTTACCGGTCAAAGTTTTGATAAATATTTGCAT 321756 Score = 127 bits (140), Expect = 2e-24 Identities = 145/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || || | |||||| || || || || ||||||||||| || | | ||| | | ||| Sbjct 321773 AGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTATAGTCTGAGAGGGTTCTACCATCT 321832 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || |||||||| ||||| | ||||||||||||||||| || || || || ||||| ||| Sbjct 321833 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGGATTCCTTCTTTATCT 321892 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | || ||||||| |||| | | ||| || ||||||| ||||| || |||||| Sbjct 321893 TGAAGCTTAGATTTGACATTTTCAATTGCGTCTGATGGTTCTACCTCAAGTGTGATAGTT 321952 Query 29755 TTGCCAGTTAAGGTT 29769 || || || || ||| Sbjct 321953 TTACCGGTCAACGTT 321967 >seq13065 Length=295510 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| |||||||||| || ||||| || || |||||||| ||||| || || || | Sbjct 163860 CCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGAC 163801 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || ||||| || || ||| | || | | ||||||||| || ||| Sbjct 163800 AAAGTACGGCCATCTTCAAGTTGCTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGA 163741 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | ||| || ||| |||| | ||||| ||| |||| || Sbjct 163740 ATTCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATGGTGTCTGAAGGTTCAACC 163681 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || || || || || | ||||| ||||| |||||||| Sbjct 163680 TCCAAAGTGATGGTCTTTCCTGTGAGTGTTTTCACAAAGATCTGCAT 163634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384910926168342