Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq63207 194 3e-44 seq13065 192 1e-43 seq57759 89.7 1e-12 seq38782 89.7 1e-12 seq55160 84.2 4e-11 >seq63207 Length=555540 Score = 194 bits (214), Expect = 3e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | ||| || || | || || || || || ||||| || || || || | Sbjct 379344 TACCTCCTCTAAGACGGAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTGTAGTCTG 379403 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || |||| || ||||| |||||||| ||||| || || | |||||| |||||||||| Sbjct 379404 AGAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAG 379463 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || ||||||||||| ||||| |||||||| || |||||| |||||| | Sbjct 379464 GAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCA 379523 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||||||| || || || || || | ||||||||||| ||||||||| Sbjct 379524 CCTCCAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCATT 379573 Score = 185 bits (204), Expect = 2e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82581 CTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCA 82640 ||||||||||| | ||| || || | || || || || || || || || || || || Sbjct 321998 CTACCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCC 322057 Query 82641 GATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGA 82700 || || ||||||| ||||| |||||||| ||||| || || | |||||| |||||||| Sbjct 322058 GAGAGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGT 322117 Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 || |||||||| || ||||||||||| ||||| |||||||| || |||||| |||||| Sbjct 322118 GGAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCC 322177 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || ||||| || || || || || | ||||||||||| |||||||| Sbjct 322178 ACCTCTAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCAT 322227 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | ||| || || | || || || || || ||||| || || || |||| Sbjct 378888 TACCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAG 378947 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || |||| || ||||| |||||||| ||||| || || | |||||| |||||||||| Sbjct 378948 AGAGCGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAG 379007 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || ||||||||||| ||||| || |||||||| || || ||||||| Sbjct 379008 GAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTA 379067 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || || || || ||||| || || |||||||| ||||| Sbjct 379068 CCTCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379116 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| | ||| || || | || || || || || ||||| || ||||| || | Sbjct 379116 TACCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTG 379175 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || |||| || ||||| |||||||| ||||| || || | |||||| |||||||||| Sbjct 379176 AGAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAG 379235 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || ||||||||||| ||||| || |||||||| | || ||||||| Sbjct 379236 GAATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGAGTCTGATGGTTCTA 379295 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || || || || ||||| || || |||||||| ||||| Sbjct 379296 CCTCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379344 Score = 168 bits (186), Expect = 1e-36 Identities = 168/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 |||||||| || | || || || || || ||||| || ||||| || || || | || Sbjct 378671 AAACGCAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAGAGGGTCCTT 378730 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| |||||||| |||||||| || | |||||| |||||||| || |||||||| Sbjct 378731 CCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCT 378790 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || ||||||||||| ||||| || |||||||| || || |||||||| || | || Sbjct 378791 TTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTG 378850 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || |||||||| || || |||||||| ||||| Sbjct 378851 ATAGTTTTACCTGTCAAAGTTTTGACAAATATTTGCAT 378888 Score = 149 bits (164), Expect = 1e-30 Identities = 162/213 (76%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||| | | | | || || | || || || || || ||||| || ||||| || | Sbjct 321756 TACCTCCTGTAAGATGTAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTATAGTCTG 321815 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||||||| ||||| |||||||| ||||| || || | |||||| |||||||| | Sbjct 321816 AGAGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTG 321875 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAAT--CGTATCATTAGGTTC 82759 | |||||||| |||||||||| ||| | ||| ||||||||||| ||| | || ||||| Sbjct 321876 GGATTCCTTCTTTATCTTGAAGCTTAGATTTGACATTTTCAATTGCGTCTGAT--GGTTC 321933 Query 82760 TACTTCCAAAGTTATCGTCTTGCCTGTCAACGT 82792 ||| || | || || || || || |||||||| Sbjct 321934 TACCTCAAGTGTGATAGTTTTACCGGTCAACGT 321966 Score = 122 bits (134), Expect = 2e-22 Identities = 157/216 (73%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | || || | || || ||||| || ||||| || || || |||| | Sbjct 321544 ACGCAGTACAAGATGAAGTATCGACTCCTTCTGAATGTTATAGTCCGAGAGGATTCCA-- 321601 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 | || ||||| || ||||| || | | |||||| ||||||| || |||||||| || Sbjct 321602 -TATTGAAGTTGCTTACCAGCGAAAAGCAATCTTTGCTGATCTGATGGAATTCCTTCTTT 321660 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| ||||| ||||||||||| || || |||||||| | | || || Sbjct 321661 GTCTTGAATCTTGGCTTTGACATTTTCAATTGTGTCTGCTGGTTCTACCGCAAGTGTGAT 321720 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||| || || | |||||| ||||| Sbjct 321721 AGTTTTACCGGTCAAAGTTTTGATAAATATTTGCAT 321756 >seq13065 Length=295510 Score = 192 bits (212), Expect = 1e-43 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||||||||||| ||||| || || || ||||||||||| ||||| || || | Sbjct 163862 TACCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTG 163803 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | || ||||| ||||| || || |||||||| || | ||| |||||||| | Sbjct 163802 ACAAAGTACGGCCATCTTCAAGTTGCTTACCGGCAAAGATGAGACGTTGCTGATCTGGGG 163743 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||| || ||||| || || || |||||||||||||| || || |||||| | Sbjct 163742 GAATTCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATGGTGTCTGAAGGTTCAA 163683 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||||||| || ||||| ||||| | || || ||||| |||||||| Sbjct 163682 CCTCCAAAGTGATGGTCTTTCCTGTGAGTGTTTTCACAAAGATCTGCAT 163634 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||||||||||| ||||| || || || ||||||||||| ||||| || || | Sbjct 164090 TACCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTG 164031 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | ||| ||||| |||||||| || |||||||| || | ||| |||||||| | Sbjct 164030 ACAAAGTACGACCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGG 163971 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| || || ||||| || |||||||||||||| || || ||||| | Sbjct 163970 GAATTCCTTCCTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAA 163911 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||| || || | || || || || || ||||| Sbjct 163910 CCTCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCAT 163862 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||||||||||| ||||| || || || ||||||||||| || || || || || Sbjct 164316 CCTCCTCTCAAACGCAAGACTAAATGGAGGGTCGATTCTTTCTGAATGTTGTAGTCTGAC 164257 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | | || ||||| |||||||| || |||||||| || | ||| |||||||| || Sbjct 164256 AAAGTACGGCCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGA 164197 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 |||||||| || || || ||||| || |||||||||||||| || || ||||| || Sbjct 164196 ATTCCTTCTTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAACC 164137 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||| || || | || || || || || ||||| Sbjct 164136 TCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCAT 164090 >seq57759 Length=555176 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 || ||||| ||||| ||||| || || ||||||||||| || ||| ||| || ||||| Sbjct 200316 CCCTCCTTGTCTTGGATCTTGGCCTTGACATTTTCAATTGTGTCAGAAGGCTCGACTTCT 200375 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || || || || ||||| ||||||||||| |||||||| Sbjct 200376 AGTGTAATGGTTTTCCCAGTCAATGTCTTTACAAAGATCTGCAT 200419 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 ||||| ||||| || ||||| | | |||| || ||||||| ||||| ||||||||||| Sbjct 199759 TTCTGAATATTGTAGTCAGACAAAGTTCTGCCATCTTCTAACTGTTTACCAGCAAAGATC 199818 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCT 82709 | ||| || ||||||||||| |||||| Sbjct 199819 AATCTCTGCTGATCTGGAGGAATTCCT 199845 >seq38782 Length=914567 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 198514 TAGGTTGTATGTGGTCTATTTGCGGATTACATGATCGAGCGTGGAAAGAAAGACCTATAT 198573 ||||||||||||||||||| || || ||||||| | || |||| |||||| || | Sbjct 663638 TAGGTTGTATGTGGTCTATATGTGGCGTACATGACCAAGGATGGAGAGAAAGGGAAATCT 663579 Query 198574 TTGGGAAGATAAGATATATGAATTATGAGGGTTCTAAGAAAAAATTTGATGTTGCTGCAT 198633 |||| ||||| | || |||||||| | || | || | ||| ||||| |||||||||| Sbjct 663578 TTGGCAAGATTCGTTACATGAATTACGCCGGATGTAGAAGAAAGTTTGAGGTTGCTGCAT 663519 Query 198634 TT 198635 || Sbjct 663518 TT 663517 >seq55160 Length=560674 Score = 84.2 bits (92), Expect = 4e-11 Identities = 124/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTA-TAGAATACTTAGATACGG 60197 |||||||| |||||||||||||| ||| | || |||||| ||||| |||| || Sbjct 298973 GATAGCCAAAGCATTATGGTGGTTTTATTTCTC-CAAGGTAGTAGAAATGATAGACACAT 299031 Query 60198 TGTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATT 60257 | |||||||| | | |||||| || || || |||||| | || || || |||||| Sbjct 299032 TATTTTTCATTGTACGTAAAAAGAACAACCAAGTGAGTTTTCTTCATGTGTACCATCATG 299091 Query 60258 TTACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAA 60310 | |||||| || || | ||| | || |||||||| | ||||| || ||| Sbjct 299092 CATCAATGTTTCCTCTATGGTGGATTGGTGTTAAATGGGTCGCCGGTGGACAA 299144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981001194299418