Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq63207 109 4e-19 seq13065 104 2e-17 >seq63207 Length=555540 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| | ||| | || | ||| || || ||| ||||| |||||||| || || Sbjct 322000 ACCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCCGA 322059 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | || || | |||||| || || |||||||| | ||||||||| | || Sbjct 322060 GAGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGG 322119 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||| || | || |||| || | ||| || | ||||| Sbjct 322120 AATTCCTTCTTTGTCTTGAATCTT-GGCTTTGACATTTTCGATGGTATCAGAAGGTTCCA 322178 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | || | ||||| |||||||| || | || ||||||||||||||||| || Sbjct 322179 CCTCTAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCATCGT 322230 Score = 109 bits (120), Expect = 4e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||||| | || | ||| || || ||| || || ||||| || || ||| Sbjct 378662 CCACCACGTAAACGCAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAG 378721 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | | || || | |||||| || ||||||||||| | ||||||||| | || Sbjct 378722 AGGGTCCTTCCATCTTCAAGTTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGTGGA 378781 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| ||| || | || || | || | ||||| || ||| || Sbjct 378782 ATTCCTTCTTTGTCTTGAATCTT-GGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTAC 378840 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| ||||||||||| || ||||| ||||| || |||||| Sbjct 378841 CTCAAGTGTGATAGTTTTACCTGTCAAAGTTTTGACAAATATTTGCATA 378889 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| | ||| | || | ||| || || ||| || || |||||||| || || Sbjct 379345 ACCTCCTCTAAGACGGAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTGTAGTCTGA 379404 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | | || || | |||||| || || |||||||| | ||||||||| | || Sbjct 379405 GAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGG 379464 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||| || | || |||| || | ||| || | ||||| Sbjct 379465 AATTCCTTCTTTGTCTTGAATCTT-GGCTTTGACATTTTCGATGGTATCAGAAGGTTCCA 379523 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | || | ||||| |||||||| || | || ||||||||||||||||| || Sbjct 379524 CCTCCAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCATTGT 379575 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| | ||| | || | ||| || || ||| || || |||||||| || || Sbjct 378889 ACCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGA 378948 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | | || || | |||||| || || |||||||| | ||||||||| | || Sbjct 378949 GAGCGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGG 379008 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||| || | || || | || | ||||| || ||| | Sbjct 379009 AATTCCTTCTTTGTCTTGAATCTT-GGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTA 379067 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| |||||||| || || ||||| ||||| || |||||| Sbjct 379068 CCTCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCATA 379117 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||| | ||| | || | ||| || || ||| || || ||||| || || || Sbjct 379117 ACCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGA 379176 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || | | | || || | |||||| || || |||||||| | ||||||||| | || Sbjct 379177 GAGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGG 379236 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||| || | || || | || | | ||| || ||| | Sbjct 379237 AATTCCTTCTTTGTCTTGAATCTT-GGCTTTGACGTTTTCAATTGAGTCTGATGGTTCTA 379295 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| |||||||| || || ||||| ||||| || |||||| Sbjct 379296 CCTCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCATA 379345 >seq13065 Length=295510 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||||||| || || ||||| || || ||||| || || ||||| || || Sbjct 163861 ACCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGA 163802 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || | ||| || |||||||| || | ||| ||||||||| | || Sbjct 163801 CAAAGTACGGCCATCTTCAAGTTGCTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGG 163742 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| ||||| | | |||| || | |||||| | ||| | Sbjct 163741 AATTCCTTCTTTGTCTTGGATTTT-AGCCTTTACATTTTCAATGGTGTCTGAAGGTTCAA 163683 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || ||||| | ||||| |||||||||||||| Sbjct 163682 CCTCCAAAGTGATGGTCTTTCCTGTGAGTGTTTTCACAAAGATCTGCAT 163634 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||||||||| || || ||||| || || ||||| || |||||||| || || Sbjct 164316 CCTCCTCTCAAACGCAAGACTAAATGGAGGGTCGATTCTTTCTGAATGTTGTAGTCTGAC 164257 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || || | |||||| |||||||| || | ||| ||||||||| | || Sbjct 164256 AAAGTACGGCCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGA 164197 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| || || | | |||| || | |||||| || ||| || Sbjct 164196 ATTCCTTCTTTGTCCTGGATCTT-AGCCTTTACATTTTCAATGGTGTCTGATGGTTCAAC 164138 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| || || || || || || | ||||| || || || |||||| Sbjct 164137 CTCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCATA 164089 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| ||||||||||| || || ||||| || || ||||| || || ||||| || || Sbjct 164089 ACCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGA 164030 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || || | |||||| |||||||| || | ||| ||||||||| | || Sbjct 164029 CAAAGTACGACCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGG 163970 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || || | | |||| || | |||||| || ||| | Sbjct 163969 AATTCCTTCCTTGTCCTGGATCTT-AGCCTTTACATTTTCAATGGTGTCTGATGGTTCAA 163911 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || || || || || | ||||| || || || |||||| Sbjct 163910 CCTCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCATA 163861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328440952775040