Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq63207 127 5e-24 seq13065 122 2e-22 seq4946 91.5 3e-13 >seq63207 Length=555540 Score = 127 bits (140), Expect = 5e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || ||||| ||||||||||| |||||| |||||| Sbjct 379569 CAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCACTTTGGAGGTGGAACCTTCTGAT 379510 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| || ||||||||| |||||||||||| || || || Sbjct 379509 ACCATCGAAAATGTCAAAGCCAA-GATTCAAGACAAAGAAGGAATTCCTCCAGATCAGCA 379451 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| | || ||||| || || || | ||||||||||| || | | || |||||| | Sbjct 379450 AAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCAGACTACAACAT 379391 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||| ||||| Sbjct 379390 TCAGAAGGAGTCGACACTTCATCTTGT 379364 Score = 114 bits (126), Expect = 3e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || ||||| |||||||| || |||||| |||||| Sbjct 322224 CAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCACTTTAGAGGTGGAACCTTCTGAT 322165 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| || ||||||||| |||||||||||| || || || Sbjct 322164 ACCATCGAAAATGTCAAAGCCAA-GATTCAAGACAAAGAAGGAATTCCACCAGATCAGCA 322106 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| | || ||||| || || || | |||||||| || || | | || |||||| | Sbjct 322105 AAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGTAGAACCCTCTCGGACTACAACAT 322046 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 || || ||||| || ||||| ||||| Sbjct 322045 TCAAAAGGAGTCAACACTTCATCTTGT 322019 Score = 109 bits (120), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| |||||| | ||||| ||||| ||||| | || || ||| || ||| Sbjct 378885 CAAATATTTGTCAAAACTTTGACAGGTAAAACTATCACACTTGAGGTAGAACCATCAGAC 378826 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| || ||||| || ||||||||| |||||||||||| || || || Sbjct 378825 ACAATTGAAAACGTCAAAGCCAA-GATTCAAGACAAAGAAGGAATTCCACCAGATCAGCA 378767 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| | || || || || || || | |||||||||||||| | | || || ||| | Sbjct 378766 AAGATTGATTTTTGCTGGTAAACAACTTGAAGATGGAAGGACCCTCTCAGACTATAACAT 378707 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||| ||||| Sbjct 378706 TCAGAAGGAGTCAACACTTCATCTTGT 378680 Score = 109 bits (120), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| |||||| | || || ||||| ||||| | || || ||| || ||| Sbjct 379113 CAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCAGAC 379054 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| || ||||| || ||||||||| |||||||||||| || || || Sbjct 379053 ACAATTGAAAACGTCAAAGCCAA-GATTCAAGACAAAGAAGGAATTCCTCCAGATCAGCA 378995 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| | || ||||| || || || | ||||||||||| || | | || |||||| | Sbjct 378994 AAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACGCTCTCTGACTACAACAT 378935 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||| ||||| Sbjct 378934 TCAGAAGGAGTCAACACTTCATCTTGT 378908 Score = 100 bits (110), Expect = 7e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| |||||| | || || ||||| ||||| | || || ||| || ||| Sbjct 379341 CAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCAGAC 379282 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| || ||||||||| |||||||||||| || || || Sbjct 379281 TCAATTGAAAACGTCAAAGCCAA-GATTCAAGACAAAGAAGGAATTCCTCCAGATCAGCA 379223 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 |||| | || ||||| || || || | ||||||||||| || | | || || ||| | Sbjct 379222 AAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCAGACTATAACAT 379163 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||| ||||| Sbjct 379162 TCAGAAGGAGTCAACACTTCATCTTGT 379136 >seq13065 Length=295510 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||||||||| || ||||||||||| || ||| ||| ||| Sbjct 163637 CAGATCTTTGTGAAAACACTCACAGGAAAGACCATCACTTTGGAGGTTGAACCTTCAGAC 163696 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| |||||| || || ||||| |||||||||||| || || ||| Sbjct 163697 ACCATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGAATTCCCCCAGATCAGCAA 163756 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||| ||||| | |||||||| | |||||| | || ||||| | Sbjct 163757 CGTCTCATCTTTGCCGGTAAGCAACTTGAAGATGGCCGTACTTTGTCAGACTACAATATT 163816 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 |||||||| || || || || Sbjct 163817 CAGAAAGAATCAACCCTCCA 163836 Score = 87.8 bits (96), Expect = 4e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || ||||| || || || | || || ||| || ||||| | ||| Sbjct 164105 AAAACACTTACTGGAAAGACAATTACACTTGAGGTTGAACCATCAGACACCATTGAAAAT 164164 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || |||||||||||| || || ||| | || ||||| Sbjct 164165 GTAAAGGCTAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAGCAACGTCTCATCTTT 164224 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || | |||||||| | |||||| | || |||||| | |||||||| || Sbjct 164225 GCCGGTAAACAACTTGAAGATGGCCGTACTTTGTCAGACTACAACATTCAGAAAGAATCG 164284 Query 206365 ACTCTTCA 206372 || || || Sbjct 164285 ACCCTCCA 164292 >seq4946 Length=1295357 Score = 91.5 bits (100), Expect = 3e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 206271 AGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAG 206330 ||||||| || ||| || ||| | ||||| || || || |||||||||||||| || Sbjct 125717 AGGAATTCCCCCTGACCAACAGAGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGCAG 125776 Query 206331 GACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 || ||| |||| |||||| ||||||| |||||||| ||||| ||||| Sbjct 125777 AACATTGTCCGACTACAACATCCAGAAGGAGTCTACCCTTCATCTTGT 125824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180826540808702