Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq63207 138 1e-27 seq13065 109 6e-19 >seq63207 Length=555540 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| || || | || || || || || || ||||| |||||||||||||| | Sbjct 378890 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAG 378949 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || | | | || || || ||||| || || |||||||| | |||||||| || || Sbjct 378950 AGCGTTCTTCCA-TCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGG 379008 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || |||||||| |||||||| || |||||| || | |||||| || | ||| || Sbjct 379009 AATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTAC 379068 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||||||||| |||||||| || || |||||||| Sbjct 379069 CTCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379116 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| || || | || || || || || || ||||| |||||||| ||||| Sbjct 379118 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAG 379177 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| || || |||||||| | |||||||| || || Sbjct 379178 AGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGA 379237 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| |||||||| || |||||| || | || ||| || | ||| || Sbjct 379238 ATTCCTTCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGAGTCTGATGGTTCTACC 379297 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||||||||| |||||||| || || |||||||| Sbjct 379298 TCAAGTGTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379344 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| || || | || || || || || || |||||||||||||||||||| Sbjct 322001 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCCGAG 322060 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || || ||||| || || |||||||| | |||||||| || || Sbjct 322061 AGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGA 322120 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| |||||||| || |||||| || | || || || | |||||| Sbjct 322121 ATTCCTTCTTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACC 322180 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || | ||| ||||||||||| || | || || || || || ||||| Sbjct 322181 TCTAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCAT 322227 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||| || || || || || || ||||| |||||||| ||||| | ||| Sbjct 378674 CGCAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAGAGGGTCCTTCCA 378733 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || || ||||| || ||||||||||| | |||||||| || || || |||||||| Sbjct 378734 TCTTCAAGTTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTTG 378793 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 |||||||| || |||||| || | |||||| || | ||| || || || || || Sbjct 378794 TCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTGATA 378853 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| || |||||||| || || |||||||| Sbjct 378854 GTTTTACCTGTCAAAGTTTTGACAAATATTTGCAT 378888 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| || || | || || || || || || ||||| |||||||||||||| Sbjct 379346 CCTCCTCTAAGACGGAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTGTAGTCTGAG 379405 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || ||||| || || |||||||| | |||||||| || || Sbjct 379406 AGGGTTCTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGA 379465 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| |||||||| || |||||| || | || || || | |||||| Sbjct 379466 ATTCCTTCTTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACC 379525 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | ||| ||||||||||| || | || || || || || |||||| Sbjct 379526 TCCAAAGTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCATT 379573 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||| | || | | || || || || || || ||||| |||||||| ||||| Sbjct 321758 CCTCCTGTAAGATGTAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTATAGTCTGAG 321817 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || || ||||| || || |||||||| | |||||||| || || Sbjct 321818 AGGGTTCTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGG 321877 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| ||||||| || |||||| || | || ||| || | ||| || Sbjct 321878 ATTCCTTCTTTATCTTGAAGCTTAGATTTGACATTTTCAATTGCGTCTGATGGTTCTACC 321937 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || || || ||||||||||| || ||| Sbjct 321938 TCAAGTGTGATAGTTTTACCGGTCAACGTT 321967 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 || || || || || |||| ||| | |||||||| | || || |||||||| |||||| Sbjct 321608 AGTTGCTTACCAGCGAAAAGCAATCTTTGCTGATCTGATGGAATTCCTTCTTTGTCTTGA 321667 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || |||||| || | |||||| | | ||| || | || || || |||||| Sbjct 321668 ATCTTGGCTTTGACATTTTCAATTGTGTCTGCTGGTTCTACCGCAAGTGTGATAGTTTTA 321727 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| |||||||| | || |||||||| Sbjct 321728 CCGGTCAAAGTTTTGATAAATATTTGCAT 321756 >seq13065 Length=295510 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GC 134544 ||||||||| | ||||| || | || || || ||||| || |||||||||||||| | Sbjct 164317 TCCTCCTCTCAAACGCAAGACTAAATGGAGGGTCGATTCTTTCTGAATGTTGTAGTCTGA 164258 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 ||| | | | || || || ||||| || ||||| || | ||| |||||||| || | Sbjct 164257 CAAAGTACGGCCA-TCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGG 164199 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || |||||||| || || || || || || || | ||||| || | ||| | Sbjct 164198 GAATTCCTTCTTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAA 164139 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || || ||||| || || || || | ||||| |||||||||||||| Sbjct 164138 CCTCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCAT 164090 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 |||||||| | ||||| || | || || || ||||| || ||||| |||||||| | | Sbjct 164088 CCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGAC 164029 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | || || || || ||||| || ||||| || | ||| |||||||| || || Sbjct 164028 AAAG-TACGACCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGG 163970 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || || || || || || || | ||||| || | ||| || Sbjct 163969 AATTCCTTCCTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAAC 163910 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| || || || || | ||||| |||||||||||||| Sbjct 163909 CTCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCAT 163862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504983581628240