Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq45842 134 2e-26 seq63864 116 5e-21 >seq45842 Length=221613 Score = 134 bits (148), Expect = 2e-26 Identities = 167/228 (73%), Gaps = 3/228 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | || || || || || |||||||| | || | || | Sbjct 80242 CCTCATCTCTACTGATAAGCTCATTGCTGAAAGTAAGACCAGGCATAATTCCTCTTTTCT 80301 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || || || |||||| ||||| || || || ||||||||||||||||| | Sbjct 80302 TCAGCCAGAAAATAGCTGCAAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAAAG 80361 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTATCA---TTATGTATCCACTTCTGTGCCCAATCAG 39815 | |||| ||||||| | || || || | | || ||||| || |||||||| | Sbjct 80362 CTACAACTCTCTCTGCATATGCTGCATTACTTTCATTGATCCATTTAATGGCCCAATCTG 80421 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 | || | |||||||| |||||||| || ||||||||||| ||||||| Sbjct 80422 CCTTTTCTTTTACACATGGCATTGTCTCAATAGCATTAAACAGATAAT 80469 Score = 107 bits (118), Expect = 3e-18 Identities = 147/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 |||| |||||||| || |||||||||||||| |||||||| || | | |||| || | Sbjct 81552 CCAAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGATATGA 81611 Query 40059 AATAT---TTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTA 40115 ||| | | |||||| | ||| || | ||| | | ||||||||| | ||| | Sbjct 81612 AATGTCGCTCTTCATC---TTTCAGGTTTTCCCAATGCCCTAAATCTTTTGACAAATCAA 81668 Query 40116 CTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGAT 40175 |||| || || ||||| || || || ||||| || |||||||| | ||| || ||| | | Sbjct 81669 CTTCCTCTGCAGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATCTGCCAGATGTCATGGT 81728 Query 40176 ATTGTATTGGAAAAATAACAAATC 40199 | || || || || | |||||||| Sbjct 81729 ACTGAATGGGGAAGACAACAAATC 81752 >seq63864 Length=1411193 Score = 116 bits (128), Expect = 5e-21 Identities = 163/226 (72%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 69504 TGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGG 69563 ||| || ||| || ||||| |||||||| || ||| |||||||||||||| ||| Sbjct 1069187 TGTGTACAGCTTCTCAAATTCCTCTCCCCAGCAGTCTGCCAGTCCAGGACATTCATGTGG 1069246 Query 69564 ACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCA 69623 |||| ||| | |||| | ||| || || |||||||| || | || |||||||| Sbjct 1069247 GCACAGCAAGGTCCACTCTCCATTGCTCTCTACACGTTTCATGAACAAGTCTGGAATCCA 1069306 Query 69624 AAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGAT 69682 | ||| ||| || ||||| |||| |||| |||||| || ||||| ||||| || | Sbjct 1069307 CATAGC-ATAGAACAGATCCCTGGCTCTAGATTCTTCTTTACCTGTGTTTTTCTTGCAGT 1069365 Query 69683 CGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 | | || || | ||||||| |||||||||||| || || || || Sbjct 1069366 CTAAGAAATCAAATATATCAGCATGCCATGGTTCCAGGTACATAGC 1069411 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| | ||||||||||| || |||| |||| ||| |||| ||||||||||| |||| Sbjct 1050493 TCCAAGCATAGAAATGCATGCTGGTTAATTTGCCATAGTTTGGCTCGGCTATATGTATAT 1050552 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || ||||| || || ||||| ||||||||||| || ||||| || || | | ||| Sbjct 1050553 TTAGAGACTGACTCTGGTCAATGAATGCTCCTCTATCGGCAGCCATCTTGATCACAGTCT 1050612 Query 68561 TTTGAGGAATTTCCCAAATAGT 68582 | || | || ||||| | ||| Sbjct 1050613 TCTGGGAGATCTCCCACACAGT 1050634 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/192 (73%), Gaps = 10/192 (5%) Strand=Plus/Plus Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 ||||| || ||||||||||| || ||||||||||| || || ||||||||||| ||||| Sbjct 1067856 ATATTCTACAATCTCTGTACACAGGTTACTACATTTAATGGTTCCCAGATTTTGTTGATT 1067915 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 ||| ||||||| || ||||| | || | |||||||||||||| | || || Sbjct 1067916 TGACTTGCGGTTACAGTGATCTTTGTATAACATGTAAGGAGTACCAGTTTCTGTTTGTGA 1067975 Query 69435 TTCGATAATAGATTTCCAAACGACCCT--AGCATTTATTACGGTCTT--GT-AACGCTTC 69489 ||| ||||| | | ||| | || | ||| || ||| || || || |||||| Sbjct 1067976 TTCAATAATGGCGTACCATA--ACTGTTGAGCTTTAATT---GTTTTACGTCCGCGCTTC 1068030 Query 69490 TCTTTTTCATAT 69501 |||||||||||| Sbjct 1068031 TCTTTTTCATAT 1068042 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 ||||||| | || | ||||||||||| || ||||| | || ||||||||||||| Sbjct 1084235 CACTAAAGATCTTCCTGGTTTCCTTGTGCAAGTTTGACACAGCAATTCTGGCTGCTAACT 1084294 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 |||||||| ||||| | || || ||||| ||| |||| ||||| | |||| | Sbjct 1084295 GGGCATAGTCTGGATGCTTAGTTGTCATGGTAGCAGCTGTTTCAGCAGCAAGGTTATCCA 1084354 Query 70454 ATTCTATAGTTGTAACTCC--GTTATATAGCCCTTGAATAACTTTCA 70498 ||| ||||| || || || | |||| |||| || ||| ||||||| Sbjct 1084355 GTTCAATAGTGGTGACACCTGGGTATA-AGCCATT-AATCACTTTCA 1084399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686345002429680