Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq13065 120 3e-22 >seq13065 Length=295510 Score = 120 bits (132), Expect = 3e-22 Identities = 172/241 (71%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 27015 TTATTG-CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTA 27073 |||||| ||||| | ||| ||||| || ||||| | || || ||||| ||||| ||||| Sbjct 164323 TTATTGTCCTCCTCTCAAACGCAAGACTAAATGGAGGGTCGATTCTTTCTGAATGTTGTA 164264 Query 27074 GTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATC 27133 ||| || | || | ||||| || ||||||||||| | |||||||| || ||||| Sbjct 164263 GTCTGACAAAGTACGGCCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATC 164204 Query 27134 CGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGC 27193 || || | || ||||| || |||||| || | |||| | ||||||| | Sbjct 164203 TGGGGGAATTCCTTCTTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGG 164144 Query 27194 TTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGC 27253 |||||| || || || || | || || || || |||||||| || ||||||||| || | Sbjct 164143 TTCAACCTCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCATACCTCC 164084 Query 27254 T 27254 | Sbjct 164083 T 164083 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| ||||| || ||||| | || || ||||| |||||||||||||| | Sbjct 164088 CCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGAC 164029 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| || ||||||||||| | |||||||| || ||||| || || Sbjct 164028 AAAGTACGACCATCTTCAAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGA 163969 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || |||||| || | |||| | ||||||| | |||||| Sbjct 163968 ATTCCTTCCTTGTCCTGGATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAACC 163909 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 || || || || | || || || || |||||||| || ||||||||| || || Sbjct 163908 TCAAGTGTAATTGTCTTTCCAGTAAGTGTTTTCACGAAAATTTGCATACCTCCT 163855 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| ||||| || ||||| | || || ||||| |||||||||||||| | Sbjct 163860 CCTCCTCTCAAACGCAAGACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGAC 163801 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | ||||| || || |||||||| | |||||||| || ||||| || || Sbjct 163800 AAAGTACGGCCATCTTCAAGTTGCTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGA 163741 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || ||||| || ||| || || | |||| | ||||||| | |||||| Sbjct 163740 ATTCCTTCTTTGTCTTGGATTTTAGCCTTTACATTTTCAATGGTGTCTGAAGGTTCAACC 163681 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| || | || || || || |||||||||||||| ||||| Sbjct 163680 TCCAAAGTGATGGTCTTTCCTGTGAGTGTTTTCACAAAGATCTGCAT 163634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424594343856144