Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq13065 187 3e-42 seq63207 150 2e-31 >seq13065 Length=295510 Score = 187 bits (206), Expect = 3e-42 Identities = 171/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || ||||| || ||||| ||||| ||||||||||| || Sbjct 163862 ATGCAAATTTTCGTGAAAACACTTACTGGAAAGACAATTACACTTGAGGTTGAACCATCA 163921 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | |||||||| || ||||||||||| |||||||| ||||| ||| Sbjct 163922 GACACCATTGAAAATGTAAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 163981 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| ||||| ||||| || |||| |||||| | ||||||| ||| Sbjct 163982 CAACGTCTCATCTTTGCCGGTAAACAACTTGAAGATGGTCGTACTTTGTCAGACTACAAT 164041 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 | || || ||||| || || ||| ||||||||||| Sbjct 164042 ATTCAGAAAGAATCAACCCTCCATTTAGTCTTGCGT 164077 Score = 178 bits (196), Expect = 1e-39 Identities = 178/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || || || ||||| || ||||| ||||| ||||||||||| || Sbjct 164090 ATGCAAATTTTCGTGAAAACACTTACTGGAAAGACAATTACACTTGAGGTTGAACCATCA 164149 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | |||||||| || |||||||| || |||||||| ||||| ||| Sbjct 164150 GACACCATTGAAAATGTAAAGGCTAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 164209 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| ||||| ||||| || |||| ||||| | ||||||| || Sbjct 164210 CAACGTCTCATCTTTGCCGGTAAACAACTTGAAGATGGCCGTACTTTGTCAGACTACAAC 164269 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | || || ||||| || || ||| ||||||||||| | | || |||||| Sbjct 164270 ATTCAGAAAGAATCGACCCTCCATTTAGTCTTGCGTTTGAGAGGAGGACAA 164320 Score = 168 bits (186), Expect = 8e-37 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || || ||||| || ||| | |||||||| | Sbjct 163634 ATGCAGATCTTTGTGAAAACACTCACAGGAAAGACCATCACTTTGGAGGTTGAACCTTCA 163693 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||||||||| || ||||| || |||||||| ||||| ||| Sbjct 163694 GACACCATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGAATTCCCCCAGATCAG 163753 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| ||||||||||| || |||| ||||| | ||||||| ||| Sbjct 163754 CAACGTCTCATCTTTGCCGGTAAGCAACTTGAAGATGGCCGTACTTTGTCAGACTACAAT 163813 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 | || || ||||| || || ||| ||||||||||| Sbjct 163814 ATTCAGAAAGAATCAACCCTCCATTTAGTCTTGCGT 163849 >seq63207 Length=555540 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || | || || || ||||| || |||||||| || || Sbjct 378888 ATGCAAATATTTGTCAAAACTTTGACAGGTAAAACTATCACACTTGAGGTAGAACCATCA 378829 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | || || || ||||| ||||| || |||||||| ||||| ||| Sbjct 378828 GACACAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAG 378769 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | |||||||||||||| ||||| || |||| | ||||| |||||||||| Sbjct 378768 CAAAGATTGATTTTTGCTGGTAAACAACTTGAAGATGGAAGGACCCTCTCAGACTATAAC 378709 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||| || || |||||||| || ||||| | || |||||| Sbjct 378708 ATTCAGAAGGAGTCAACACTTCATCTTGTACTGCGTTTACGTGGTGGA 378661 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| ||||| || || || || ||| | ||||| || | Sbjct 379573 AATGCAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCACTTTGGAGGTGGAACCTTC 379514 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| ||| | |||| | || || || ||||| ||||| || |||||||||||||| || Sbjct 379513 TGATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCA 379454 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | | ||||| |||||||| ||||| || |||| | ||||| ||||||| || Sbjct 379453 GCAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCAGACTACAA 379394 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || |||||||| || | |||||| | || || Sbjct 379393 CATTCAGAAGGAGTCGACACTTCATCTTGTACTCCGTCTTAGAGGAGG 379346 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || | ||||| || ||||| || |||||||| || || Sbjct 379344 ATGCAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCA 379285 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || |||| ||| | || || || ||||| ||||| || |||||||||||||| ||| Sbjct 379284 GACTCAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 379225 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | ||||| |||||||| ||||| || |||| | ||||| |||||||||| Sbjct 379224 CAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCAGACTATAAC 379165 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || |||||||| || | |||||| | || || Sbjct 379164 ATTCAGAAGGAGTCAACACTTCATCTTGTACTCCGTCTTAGAGGAGG 379118 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || | ||||| || ||||| || |||||||| || || Sbjct 379116 ATGCAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCA 379057 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | || || || ||||| ||||| || |||||||||||||| ||| Sbjct 379056 GACACAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 378997 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | ||||| |||||||| ||||| || |||| | || || | ||||| || Sbjct 378996 CAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACGCTCTCTGACTACAAC 378937 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || |||||||| || | |||||| | || || Sbjct 378936 ATTCAGAAGGAGTCAACACTTCATCTTGTACTCCGTCTTAGAGGAGG 378890 Score = 122 bits (134), Expect = 1e-22 Identities = 164/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||| |||| || | ||||| || ||||| || |||| ||| || ||| Sbjct 321756 ATGCAAATATTTATCAAAACTTTGACCGGTAAAACTATCACACTTGCGGTAGAACCAGCA 321697 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | || || || ||||| ||||| || |||||||| |||| ||| Sbjct 321696 GACACAATTGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCATCAGATCAG 321637 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | |||| |||||||||||||| | || || | | ||| | |||||||| Sbjct 321636 CAAAGATTGCTTTTCGCTGGTAAGCAACTTCA--AT-ATGGAATCCTCTCGGACTATAAC 321580 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTG 27631 | || ||||| || | |||||||| || ||||||| || |||| Sbjct 321579 ATTCAGAAGGAGTCGATACTTCATCTTGTACTGCGTCTACGTGGTG 321534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569842303481440