Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq63207 149 5e-31 seq13065 125 6e-24 seq38782 98.7 9e-16 >seq63207 Length=555540 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| |||||| |||| || || |||| || ||||| || ||||| || Sbjct 378888 ATGCAAATATTTGTCAAAACTTTGACAGGTAAAACTATCACACTTGAGGTAGAACCATCA 378829 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || ||||||||||||||||| || ||||| ||||| Sbjct 378828 GACACAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAG 378769 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | || || |||||| | ||||| | |||| | || || || ||| Sbjct 378768 CAAAGATTGATTTTTGCTGGTAAACAACTTGAAGATGGAAGGACCCTCTCAGACTATAAC 378709 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || | ||| | || ||||||| || ||||| Sbjct 378708 ATTCAGAAGGAGTCAACACTTCATCTTGTACTGCGTTTACGTGGTGG 378662 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| |||||| ||||||| || |||| || ||||| || ||||| || Sbjct 379344 ATGCAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCA 379285 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||||| ||||| | |||||| || ||||||||||||||||| || || || ||||| Sbjct 379284 GACTCAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 379225 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||| || |||||| | ||||| | ||| | || || || ||| Sbjct 379224 CAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCAGACTATAAC 379165 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||| |||||||| || Sbjct 379164 ATTCAGAAGGAGTCAAC 379148 Score = 136 bits (150), Expect = 3e-27 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 26968 AATTTTTTAATTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTA 27027 |||||||| || | ||| |||||||| |||||||| || || || || || | || | Sbjct 322245 AATTTTTTTTTTCAGACG--ATGCAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCA 322188 Query 27028 CTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAG 27087 || | || |||||||| || || | || || | |||||| || ||||||||||||| Sbjct 322187 CTTTAGAGGTGGAACCTTCTGATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAAG 322128 Query 27088 AAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTT 27147 |||| || ||||| ||||| || | || || | ||| || |||||| | ||||| || Sbjct 322127 AAGGAATTCCACCAGATCAGCAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGTA 322068 Query 27148 CGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 ||| | || || |||||||||||||||||||| || Sbjct 322067 GAACCCTCTCGGACTACAACATTCAAAAGGAGTCAAC 322031 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| |||||| ||||||| || |||| || ||||| || ||||| || Sbjct 379116 ATGCAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCA 379057 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || ||||||||||||||||| || || || ||||| Sbjct 379056 GACACAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 378997 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||| || |||||| | ||||| | || | || || |||||| Sbjct 378996 CAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACGCTCTCTGACTACAAC 378937 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||| |||||||| || Sbjct 378936 ATTCAGAAGGAGTCAAC 378920 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || || || || || | || ||| | || |||||||| || Sbjct 379572 ATGCAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCACTTTGGAGGTGGAACCTTCT 379513 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| || ||||||||||||||||| || || || ||||| Sbjct 379512 GATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 379453 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | ||| || |||||| | ||||| | ||| | || || |||||| Sbjct 379452 CAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCAGACTACAAC 379393 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||| ||||||||||| Sbjct 379392 ATTCAGAAGGAGTCGAC 379376 Score = 113 bits (124), Expect = 4e-20 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 27010 TGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAAC 27069 ||||||| || |||| || ||||| || ||||| || ||| | ||||| | |||||| Sbjct 321962 TGACCGGTAAAACTATCACACTTGAGGTAGAACCATCAGACGCAATTGAAAATGTCAAAT 321903 Query 27070 AAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCA 27129 || ||||||| |||||||| || ||||| ||||| || | || || | ||| || | Sbjct 321902 CTAAGCTTCAAGATAAAGAAGGAATCCCACCAGATCAGCAAAGATTGATTTTCGCTGGTA 321843 Query 27130 AACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 ||||| | ||||| || ||| | || || || |||||||| ||||||||||| Sbjct 321842 AACAACTTGAAGATGGTAGAACCCTCTCAGACTATAACATTCAGAAGGAGTCGAC 321788 Score = 105 bits (116), Expect = 6e-18 Identities = 169/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||| | |||||| ||||||| || |||| || |||| || ||||| | Sbjct 321756 ATGCAAATATTTATCAAAACTTTGACCGGTAAAACTATCACACTTGCGGTAGAACCAGCA 321697 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || ||||||||||||||||| || ||| | ||||| Sbjct 321696 GACACAATTGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCATCAGATCAG 321637 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || | | ||| || || ||| | || | | | | | || || || ||| Sbjct 321636 CAAAGATTGCTTTTCGCTGGTAAGCAACTTCAATA---TGGAATCCTCTCGGACTATAAC 321580 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAAACACT 27227 ||||| |||||||||| | ||| | || ||||| | || ||| ||| | ||||| | Sbjct 321579 ATTCAGAAGGAGTCGATACTTCATCTTGTACTGCGTCTACGTGGT-GCAAACTAAACATT 321521 Query 27228 T 27228 | Sbjct 321520 T 321520 >seq13065 Length=295510 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| || || || ||| | ||||| ||||| || ||||| || Sbjct 164090 ATGCAAATTTTCGTGAAAACACTTACTGGAAAGACAATTACACTTGAGGTTGAACCATCA 164149 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||||||||| || || || ||||| Sbjct 164150 GACACCATTGAAAATGTAAAGGCTAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 164209 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||| |||||| | ||||| | || | || || |||||| Sbjct 164210 CAACGTCTCATCTTTGCCGGTAAACAACTTGAAGATGGCCGTACTTTGTCAGACTACAAC 164269 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || || |||||| | ||||| || ||||||||| | || || Sbjct 164270 ATTCAGAAAGAATCGACCCTCCATTTAGTCTTGCGTTTGAGAGGAGG 164316 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || ||| | || ||| | || || ||||| || Sbjct 163634 ATGCAGATCTTTGTGAAAACACTCACAGGAAAGACCATCACTTTGGAGGTTGAACCTTCA 163693 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||||| |||||||||||||| || || || ||||| Sbjct 163694 GACACCATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGAATTCCCCCAGATCAG 163753 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | ||||| || ||| | ||||| | || | || || ||||| Sbjct 163754 CAACGTCTCATCTTTGCCGGTAAGCAACTTGAAGATGGCCGTACTTTGTCAGACTACAAT 163813 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || ||| | ||||| || ||||||||| | || || || Sbjct 163814 ATTCAGAAAGAATCAACCCTCCATTTAGTCTTGCGTTTGAGAGGAGGTAT 163863 >seq38782 Length=914567 Score = 98.7 bits (108), Expect = 9e-16 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 135648 TAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGT 135707 ||||||||||||||||||| || || ||||| || |||||||||| || | || | | Sbjct 663638 TAGGTTGTATGTGGTCTATATGTGGCGTACATGACCAAGGATGGAGAGAAAGGGAAATCT 663579 Query 135708 TTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTT 135754 ||||||||||||| || ||||| || | ||| |||| |||||| ||| Sbjct 663578 TTGGCAAGATTCGTTACATGAATTACGCCGGATGTAGAAGAAAGTTT 663532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434561429850240