Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq63207 159 8e-34 seq13065 123 6e-23 seq4946 84.2 5e-11 >seq63207 Length=555540 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| || ||||| || || ||||| || || | ||||| ||||||||| Sbjct 379361 AGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTTCTTCCATCT 379420 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || ||||| || | | ||| || || ||||||| |||||| ||||| Sbjct 379421 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCT 379480 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| || ||||||||||| ||||| ||| ||||| | |||||| || Sbjct 379481 TGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACCTCCAAAGTGATGGTT 379540 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||||||||| | ||||||| Sbjct 379541 TTACCAGTAAGGGTCTTTACAAAGATCTGCATT 379573 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| || ||||| ||||| ||||| || |||| ||||| || |||||| Sbjct 322016 AGTACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTTCTACCATCT 322075 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || ||||| || | | ||| || || || |||| |||||| ||||| Sbjct 322076 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCT 322135 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| || ||||||||||| ||||| ||| ||||| | |||||| || Sbjct 322136 TGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACCTCTAAAGTGATGGTT 322195 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||||||||| | |||||| Sbjct 322196 TTACCAGTAAGGGTCTTTACAAAGATCTGCAT 322227 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| || ||||| || || |||||||| || | ||||||||||||||| Sbjct 378677 AGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAGAGGGTCCTTCCATCT 378736 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || || || || | | ||| || || || |||| |||||| ||||| Sbjct 378737 TCAAGTTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCT 378796 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| |||||||| || ||||| || ||| ||||| || ||||| || Sbjct 378797 TGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTGATAGTT 378856 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||| || ||||| | ||||| Sbjct 378857 TTACCTGTCAAAGTTTTGACAAATATTTGCAT 378888 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| || ||||| || || |||||||| || | ||||| ||||||||| Sbjct 379133 AGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAGAGGGTTCTTCCATCT 379192 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || ||||| || | | ||| || || ||||||| |||||| ||||| Sbjct 379193 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCT 379252 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| |||||||| || | ||| || ||| ||||| || ||||| || Sbjct 379253 TGAATCTTGGCTTTGACGTTTTCAATTGAGTCTGATGGTTCTACCTCAAGTGTGATAGTT 379312 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||| || ||||| | ||||| Sbjct 379313 TTACCGGTCAAAGTTTTGACAAATATTTGCAT 379344 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| ||||| || ||||| || || ||||| || || | || || ||||||||| Sbjct 378905 AGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCTTCCATCT 378964 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || || || ||||| || | | ||| || || ||||||| |||||| ||||| Sbjct 378965 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCT 379024 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||| |||||||| || ||||| || ||| ||||| || ||||| || Sbjct 379025 TGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTGATAGTT 379084 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||| || ||||| | ||||| Sbjct 379085 TTACCGGTCAAAGTTTTGACAAATATTTGCAT 379116 >seq13065 Length=295510 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || || ||||| || || || || || | | || | |||||||| || || Sbjct 164064 TGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGACAAAGTACGACCATCTTCAAGTTGT 164005 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| || ||||| || || || |||| ||||||||||||||||||||| Sbjct 164004 TTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTA 163945 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| |||||||| || ||||||||| || || || |||||||| || Sbjct 163944 GCCTTTACATTTTCAATGGTGTCTGATGGTTCAACCTCAAGTGTAATTGTCTTTCCAGTA 163885 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || || || || || | ||||| Sbjct 163884 AGTGTTTTCACGAAAATTTGCAT 163862 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || || ||||| || ||||| || || | | || | |||||||| || || Sbjct 164292 TGGAGGGTCGATTCTTTCTGAATGTTGTAGTCTGACAAAGTACGGCCATCTTCAAGTTGT 164233 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| || ||||| || || || |||| |||||| |||||||||||||| Sbjct 164232 TTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTA 164173 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || ||||| |||||||| || ||||||||| || || || |||||||| || Sbjct 164172 GCCTTTACATTTTCAATGGTGTCTGATGGTTCAACCTCAAGTGTAATTGTCTTTCCAGTA 164113 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || || || || || | ||||| Sbjct 164112 AGTGTTTTCACGAAAATTTGCAT 164090 >seq4946 Length=1295357 Score = 84.2 bits (92), Expect = 5e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| ||||| || ||||| || |||||||| || || | | || || |||||| Sbjct 125827 AGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTTCTGCCATCT 125768 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 |||| ||| || || || ||||| | | ||||||||||| |||| |||| Sbjct 125767 TCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCT 125717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158176811942630