Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq13065 132 3e-26 seq63207 86.0 4e-12 >seq13065 Length=295510 Score = 132 bits (146), Expect = 3e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| ||||| || || ||||| || || || || || ||||| | | Sbjct 164090 ATGCAAATTTTCGTGAAAACACTTACTGGAAAGACAATTACACTTGAGGTTGAACCATCA 164149 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| |||| || || ||||||||||| | || |||||||| Sbjct 164150 GACACCATTGAAAATGTAAAGGCTAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 164209 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || |||||||| |||||||| ||||| | || ||||| || |||||| Sbjct 164210 CAACGTCTCATCTTTGCCGGTAAACAACTTGAAGATGGCCGTACTTTGTCAGACTACAAC 164269 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || ||||| || || | |||||||| || | ||| |||||||| Sbjct 164270 ATTCAGAAAGAATCGACCCTCCATTTAGTCTTGCGTTTGAGAGGAGGA 164317 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| ||||| ||||| || |||||| | || ||||| | | Sbjct 163634 ATGCAGATCTTTGTGAAAACACTCACAGGAAAGACCATCACTTTGGAGGTTGAACCTTCA 163693 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| |||| ||||| ||||||||||| | || |||||||| Sbjct 163694 GACACCATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGAATTCCCCCAGATCAG 163753 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || |||||||| || ||||| ||||| | || ||||| || ||||| Sbjct 163754 CAACGTCTCATCTTTGCCGGTAAGCAACTTGAAGATGGCCGTACTTTGTCAGACTACAAT 163813 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || ||||| || || | |||||||| || | ||| ||||||| Sbjct 163814 ATTCAGAAAGAATCAACCCTCCATTTAGTCTTGCGTTTGAGAGGAGG 163860 >seq63207 Length=555540 Score = 86.0 bits (94), Expect = 4e-12 Identities = 144/208 (69%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || || ||||| ||||| || || || || | | Sbjct 379116 ATGCAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCA 379057 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| || ||| ||||||||||| | || |||||||| Sbjct 379056 GACACAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAG 378997 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAA----GACGAACGCACTTTAGGCGATTA 23786 || | || || || || || |||||||| ||| || |||||| || | || || Sbjct 378996 CAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACGCTCTCT----GACTA 378941 Query 23787 CAACATACAAAAAGAGTCCACATTACAT 23814 |||||| || || ||||| ||| | ||| Sbjct 378940 CAACATTCAGAAGGAGTCAACACTTCAT 378913 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||||| || || ||||| |||||| | || || || | | Sbjct 379573 AATGCAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCACTTTGGAGGTGGAACCTTC 379514 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| | ||| || ||| ||||||||||| | || |||||||| Sbjct 379513 TGATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCA 379454 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || || || || |||||||| ||||| | | | || | || ||||| Sbjct 379453 GCAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCAGACTACAA 379394 Query 23790 CATACAAAAAGAGTCCACATTACAT 23814 ||| || || ||||| ||| | ||| Sbjct 379393 CATTCAGAAGGAGTCGACACTTCAT 379369 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || ||||| |||||| | || || || | | Sbjct 322227 ATGCAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCACTTTAGAGGTGGAACCTTCT 322168 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | ||| || ||| ||||||||||| | || |||||||| Sbjct 322167 GATACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAG 322108 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || || || || |||||||| ||||| | | || | || |||||| Sbjct 322107 CAAAGATTGATTTTCGCTGGTAAACAACTTGAAGATGGTAGAACCCTCTCGGACTACAAC 322048 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || ||||| ||||| ||| | ||| Sbjct 322047 ATTCAAAAGGAGTCAACACTTCAT 322024 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || ||||| | || || ||||| ||||| || || || || | | Sbjct 378888 ATGCAAATATTTGTCAAAACTTTGACAGGTAAAACTATCACACTTGAGGTAGAACCATCA 378829 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||||| | ||| || ||| ||||||||||| | || |||||||| Sbjct 378828 GACACAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAG 378769 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || ||||| || |||||||| ||||| | | | || | || || ||| Sbjct 378768 CAAAGATTGATTTTTGCTGGTAAACAACTTGAAGATGGAAGGACCCTCTCAGACTATAAC 378709 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || || ||||| ||| | ||| Sbjct 378708 ATTCAGAAGGAGTCAACACTTCAT 378685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337739105916296