Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq13065 141 2e-28 seq63207 116 9e-21 seq34425 84.2 5e-11 >seq13065 Length=295510 Score = 141 bits (156), Expect = 2e-28 Identities = 144/188 (77%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| || |||||||| || | |||||| || | |||||| | |||||||| || ||| Sbjct 163836 TGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGACAAAGTACGGCCATCTTCAAGTTGC 163777 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| || ||||| || || || ||||| ||||| ||||||||||| || Sbjct 163776 TTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTCTTGGATTTTA 163717 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||| ||||||||||| | ||| || || || ||||| ||||| || || Sbjct 163716 GCCTTTACATTTTCAATGGTGTCTGAAGGTTCAACCTCCAAAGTGATGGTCTTTCCTGTG 163657 Query 225691 AAAGTTTT 225698 | ||||| Sbjct 163656 AGTGTTTT 163649 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| || |||||||| || | |||||| || | |||||| | |||||||| || || Sbjct 164064 TGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGACAAAGTACGACCATCTTCAAGTTGT 164005 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| || ||||| || || || ||||| ||||||||||| |||||||| Sbjct 164004 TTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTA 163945 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||| ||||||||||| | ||| || || | || || ||||| || || Sbjct 163944 GCCTTTACATTTTCAATGGTGTCTGATGGTTCAACCTCAAGTGTAATTGTCTTTCCAGTA 163885 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | ||||| | ||| | |||||| Sbjct 163884 AGTGTTTTCACGAAAATTTGCAT 163862 Score = 132 bits (146), Expect = 1e-25 Identities = 151/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| || |||||||| || | ||||| || | |||||| | |||||||| || || Sbjct 164292 TGGAGGGTCGATTCTTTCTGAATGTTGTAGTCTGACAAAGTACGGCCATCTTCAAGTTGT 164233 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| || ||||| || || || ||||| ||||| ||||| |||||||| Sbjct 164232 TTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTA 164173 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||| ||||||||||| | ||| || || | || || ||||| || || Sbjct 164172 GCCTTTACATTTTCAATGGTGTCTGATGGTTCAACCTCAAGTGTAATTGTCTTTCCAGTA 164113 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | ||||| | ||| | |||||| Sbjct 164112 AGTGTTTTCACGAAAATTTGCAT 164090 >seq63207 Length=555540 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || || || || || || || | ||||| || | | ||||| |||||| Sbjct 378905 AGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTTCTTCCATCT 378964 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || |||||||| || | || ||| || || || ||||| ||||| |||||| Sbjct 378965 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCT 379024 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || || ||| || |||||||| | ||| || || | ||||| || Sbjct 379025 TGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTGATAGTT 379084 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||||||||| | || | |||||| Sbjct 379085 TTACCGGTCAAAGTTTTGACAAATATTTGCAT 379116 Score = 107 bits (118), Expect = 5e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || ||||| || || || || || || || | || || || | | ||||| |||||| Sbjct 379133 AGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAGAGGGTTCTTCCATCT 379192 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || || || |||||||| || | || ||| || || || ||||| ||||| |||||| Sbjct 379193 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCTTCTTTGTCT 379252 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| || || ||| || | |||||| | ||| || || | ||||| || Sbjct 379253 TGAATCTTGGCTTTGACGTTTTCAATTGAGTCTGATGGTTCTACCTCAAGTGTGATAGTT 379312 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||||||||| | || | |||||| Sbjct 379313 TTACCGGTCAAAGTTTTGACAAATATTTGCAT 379344 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| || || || || || || || | || || || | | || || ||||| Sbjct 378676 CAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAGAGGGTCCTTCCATC 378735 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| || || || ||||| || || | || ||| || || || ||||| ||||| ||||| Sbjct 378736 TTCAAGTTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTTGTC 378795 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||| ||||| || || ||| || |||||||| | ||| || || | ||||| || Sbjct 378796 TTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTGATAGT 378855 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||||||||| | || | |||||| Sbjct 378856 TTTACCTGTCAAAGTTTTGACAAATATTTGCAT 378888 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 225556 CCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCC 225615 |||| || || ||||| |||||||| | | || ||| || || | ||||| ||||| Sbjct 321599 CCATATTGAAGTTGCTTACCAGCGAAAAGCAATCTTTGCTGATCTGATGGAATTCCTTCT 321658 Query 225616 TTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTG 225675 |||||||| ||||| || ||| ||| || ||||||| | ||| || | | ||| Sbjct 321659 TTGTCTTGAATCTTGGCTTTGACATTTTCAATTGTGTCTGCTGGTTCTACCGCAAGTGTG 321718 Query 225676 ATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || || ||||||||||| || || | |||||| Sbjct 321719 ATAGTTTTACCGGTCAAAGTTTTGATAAATATTTGCAT 321756 >seq34425 Length=1628181 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| || || ||||| || || || || ||||| || |||||||| || || || ||||| Sbjct 732076 GAAGATCTGTCCATCTGTGATTGAAATGACATTGGTTGGGATATAGGCTGACACGTCACC 732135 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 || |||||||| | || |||| || || ||||||||||||||| Sbjct 732136 AGCCTGTGTTTCAATGACTGGTAGAGCAGTAAGTGATCCACCACCA 732181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191527930209428