Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq63864 114 2e-20 seq45842 105 9e-18 >seq63864 Length=1411193 Score = 114 bits (126), Expect = 2e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| |||||||| || ||| |||||| ||||||| |||||||| ||| | | Sbjct 1069200 TCAAATTCCTCTCCCCAGCAGTCTGCCAGTCCAGGACATTCATGTGGGCACAGCAAGGTC 1069259 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || || |||| || || |||||||| || | || || ||||| | |||| || Sbjct 1069260 CACTCTCCATTGCTCTCTACACGTTTCATGAACAAGTCTGGAATCCACATAGCATAGAAC 1069319 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 ||||| | || |||| |||||| || ||||| || || || || | || || | Sbjct 1069320 AGATCCCTGGCTCTAGATTCTTCTTTACCTGTGTTTTTCTTGCAGTCTAAGAAATCAAAT 1069379 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTC 78150 ||||||| |||||||||||| || || || || | | | || |||| Sbjct 1069380 ATATCAGCATGCCATGGTTCCAGGTACATAGCAAAAGCCCCTGGTC 1069425 Score = 113 bits (124), Expect = 6e-20 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 76843 CCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATAT 76902 |||| |||| | |||||||||||||| || | |||| ||| | || |||||||||| Sbjct 1050487 CCAGTTTCCAAGCATAGAAATGCATGCTGGTTAATTTGCCATAGTTTGGCTCGGCTATAT 1050546 Query 76903 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 76962 | ||||| | |||||||| || || ||||| ||||||||||| || ||||| || || | Sbjct 1050547 GTATATTTAGAGACTGACTCTGGTCAATGAATGCTCCTCTATCGGCAGCCATCTTGATCA 1050606 Query 76963 TGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 77017 ||||| || | || ||||| | |||| || ||| || || | || ||||| Sbjct 1050607 CAGTCTTCTGGGAGATCTCCCACACAGTTCTGTAAAGTTTCTTCAGATTGTCTGG 1050661 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 || ||||| || ||||||||||| | |||||| || ||||| || || | || | ||| Sbjct 1055910 TGGAATTCACCTGACAATACTCTTCTAGTGTAGATGTTACTTGTGTAGGCCTCTATAGAC 1055969 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || || ||||| | |||||||| || ||||| || |||||||| || | |||||| || Sbjct 1055970 TCGTTATTTCCAAGGATTTGAGCTGTGGAAGCTGTAGGCATAGGAGCTAACAATAAGCTG 1056029 Query 77247 TTTCTGAGACCATG 77260 ||||| | |||||| Sbjct 1056030 TTTCTTATACCATG 1056043 Score = 89.7 bits (98), Expect = 7e-13 Identities = 159/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 77340 CCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCA 77399 || ||||| || |||||| | || || || || || || | | || || | ||| Sbjct 1063013 CCTTTACTGACAGGTGATCCTTCGTAGGTCTCGTAGGGGCCCAATTTCTCTGCCAACTCA 1063072 Query 77400 CAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCT-TATTGAGATCTT- 77457 ||||||||||| | || | ||||| || || || || || |||| | || | ||||| Sbjct 1063073 CAACTCGCTTCTAGAGCAGCATAATACATAGTGTCAAATAT-TTCTCTGTTTA-ATCTTT 1063130 Query 77458 GTGCTTCAATACTATCAAACGGATAATGTAAA-AGAATAAAGGCATCTGCTAATCCCTGA 77516 | || || ||| ||||| || ||| | | | ||| |||||||| || | ||| || Sbjct 1063131 GGGCCTCCTCACTCTCAAATGGG-AATCTCATCAAAATGAAGGCATCAGCAAGTCCTTGG 1063189 Query 77517 ACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGC 77560 |||||||||||||||||||| |||| | | ||||| ||||||| Sbjct 1063190 ACTCCAATACCAATAGGTCTGTGTCGCATGTTGGACCTTTTAGC 1063233 >seq45842 Length=221613 Score = 105 bits (116), Expect = 9e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 48523 CCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAA 48582 |||| || |||||||| |||||||||||||| |||||||| || | | |||| || | Sbjct 81552 CCAAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGATATGA 81611 Query 48583 AATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 48642 ||| | || | |||| || | ||| | | ||||||||| | ||| |||| Sbjct 81612 AATGTCGCTCTTCATCTTTCAGGTTTTCCCAATGCCCTAAATCTTTTGACAAATCAACTT 81671 Query 48643 CTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATT 48702 | || || ||||| || || || |||||||| || ||||| | ||| || ||| ||| | Sbjct 81672 CCTCTGCAGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATCTGCCAGATGTCATGGTACT 81731 Query 48703 GGATTGGGAAAATAACAAATC 48723 | || ||||| | |||||||| Sbjct 81732 GAATGGGGAAGACAACAAATC 81752 Score = 102 bits (112), Expect = 1e-16 Identities = 157/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| || | || || || || ||||| ||||| | ||| | ||| || Sbjct 80244 TCATCTCTACTGATAAGCTCATTGCTGAAAGTAAGACCAGGCATAATTCCTCTTTTCTTC 80303 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| || || || || ||| ||||| || || || |||||||| || ||||| || Sbjct 80304 AGCCAGAAAATAGCTGCAAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAAAGCT 80363 Query 48285 GTAAGTCTCTCTCCGTA-ACTGGCTTCGTT--GTGTATCCACCGTTGTGCCCAATCAGCC 48341 || ||||||| | || ||| || || | ||||| |||||||| ||| Sbjct 80364 ACAACTCTCTCTGCATATGCTGCATTACTTTCATTGATCCATTTAATGGCCCAATCTGCC 80423 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383 || | |||||||| |||||||| || ||||||||||| ||| Sbjct 80424 TTTTCTTTTACACATGGCATTGTCTCAATAGCATTAAACAGA 80465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694098633215680