Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq45842 122 1e-22 seq63864 120 4e-22 >seq45842 Length=221613 Score = 122 bits (134), Expect = 1e-22 Identities = 163/224 (73%), Gaps = 7/224 (3%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||||||||| || | || || || || || |||||||| | ||| | || || Sbjct 80244 TCATCTCTACTGATAAGCTCATTGCTGAAAGTAAGACCAGGCATAATTCCTCTTTTCTTC 80303 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| || ||||| || ||| ||||| || || || |||||||| || || || || Sbjct 80304 AGCCAGAAAATAGCTGCAAAACTACCAGAGAAAAAAATTCCTTCTACTGCTGCAAAAGCT 80363 Query 46774 ACAAGTCTCTCTCCGTAACTGGCATCA---TTATGAATCCACCTTTGA--GCCCAATCAG 46828 |||| ||||||| | || |||| | | || ||||| ||| | |||||||| | Sbjct 80364 ACAACTCTCTCTGCATATGCTGCATTACTTTCATTGATCCA--TTTAATGGCCCAATCTG 80421 Query 46829 CCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 46872 |||||| |||||||| |||||||| || ||||||||||| ||| Sbjct 80422 CCTTTTCTTTTACACATGGCATTGTCTCAATAGCATTAAACAGA 80465 Score = 105 bits (116), Expect = 1e-17 Identities = 146/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 47013 CAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAA 47072 ||| || ||||| || |||||||||||||| |||||||| || | | |||| || || Sbjct 81553 CAAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGATATGAA 81612 Query 47073 ATAT---TTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTAC 47129 || | | |||||| |||| || | ||| | | ||||||||| | ||| || Sbjct 81613 ATGTCGCTCTTCATC---TTTCAGGTTTTCCCAATGCCCTAAATCTTTTGACAAATCAAC 81669 Query 47130 TTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATA 47189 ||| || || |||||||| || || |||||||| || ||||| | ||| || ||| | || Sbjct 81670 TTCCTCTGCAGTCCAGAAGGAGGCTTCTGCTTTCTTGTACATCTGCCAGATGTCATGGTA 81729 Query 47190 TTGGATCGGAAAAATAACAAATC 47212 || || || || | |||||||| Sbjct 81730 CTGAATGGGGAAGACAACAAATC 81752 Score = 91.5 bits (100), Expect = 2e-13 Identities = 137/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 46464 ATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGAC 46523 ||| ||||| ||||| ||||| |||||| | ||||||||||||||| | ||| Sbjct 79605 ATCGGCAACAAATTCAATATATTGTTTCATTAGAGTACAATTCATTCCTATTAAGTTGCA 79664 Query 46524 CGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATC--CGATATTATCGAT 46581 |||| ||| || || || || | |||||||| |||||||| |||| | || || Sbjct 79665 TGGTAAAGCTTCTGTGAGGAATTTCTGTTCAATTCGTACAGCATCTTTGATAATGTC-AT 79723 Query 46582 GTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCA 46641 |||| |||| | |||| || |||||||| | |||||||||| ||||||||| Sbjct 79724 -ATACTCTTTCTTGTGATGGTTTATTTATCAAATGAGTGTACATTAAACAGGCAAAATCA 79782 Query 46642 CAATGAAGGCC 46652 || ||||| || Sbjct 79783 CAGTGAAGTCC 79793 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 46891 TCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCC 46950 ||||| | || ||||| || | | ||||||||||| ||||||||||| || || || Sbjct 80941 TCTTTGATGTAGGTATCAATGAGTAAGCTATACATTTCAGAATGAATGTTCTCCATGGCA 81000 Query 46951 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTC 46994 ||||| || || ||||||||||| ||||| ||| |||||| || Sbjct 81001 ATCTGGAAACCATAAAAACATCTGGCTTCTGTAGCCTGTACTTC 81044 >seq63864 Length=1411193 Score = 120 bits (132), Expect = 4e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| |||||||| || ||| ||||||||||||| || |||| ||| | | Sbjct 1069200 TCAAATTCCTCTCCCCAGCAGTCTGCCAGTCCAGGACATTCATGTGGGCACAGCAAGGTC 1069259 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 76639 ||||| |||| || || |||||||| || | || || ||||| | |||| || Sbjct 1069260 CACTCTCCATTGCTCTCTACACGTTTCATGAACAAGTCTGGAATCCACATAGCATAGAAC 1069319 Query 76640 AGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATA 76699 ||||| | || |||| |||||| || ||||| || || || |||| ||| || | Sbjct 1069320 AGATCCCTGGCTCTAGATTCTTCTTTACCTGTGTTTTTCTTGCAGTCTAAGAAATCAAAT 1069379 Query 76700 ATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTC 76745 ||||||| |||||||||||| || || || || | | | || |||| Sbjct 1069380 ATATCAGCATGCCATGGTTCCAGGTACATAGCAAAAGCCCCTGGTC 1069425 Score = 118 bits (130), Expect = 2e-21 Identities = 131/175 (75%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 75438 CCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATAT 75497 |||| |||| | |||||||||||||| |||| |||| ||| | || |||||||||| Sbjct 1050487 CCAGTTTCCAAGCATAGAAATGCATGCTGGTTAATTTGCCATAGTTTGGCTCGGCTATAT 1050546 Query 75498 GAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAA 75557 | ||||| | |||||||| || || ||||| ||||||||||| || ||||| || || | Sbjct 1050547 GTATATTTAGAGACTGACTCTGGTCAATGAATGCTCCTCTATCGGCAGCCATCTTGATCA 1050606 Query 75558 TGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 75612 ||||| || | || ||||| | |||| || ||| || || | || ||||| Sbjct 1050607 CAGTCTTCTGGGAGATCTCCCACACAGTTCTGTAAAGTTTCTTCAGATTGTCTGG 1050661 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 || ||||| || ||||||||||||| |||||| || ||||| || || | || | ||| Sbjct 1055910 TGGAATTCACCTGACAATACTCTTCTAGTGTAGATGTTACTTGTGTAGGCCTCTATAGAC 1055969 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 || || ||||| | |||||||| || ||||| || |||||||| || | |||||| || Sbjct 1055970 TCGTTATTTCCAAGGATTTGAGCTGTGGAAGCTGTAGGCATAGGAGCTAACAATAAGCTG 1056029 Query 75842 TTTCTGAGACCATG 75855 ||||| | |||||| Sbjct 1056030 TTTCTTATACCATG 1056043 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 75949 TGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAA 76008 |||||| | || || ||||| | || || || || | || |||||||| |||| Sbjct 1063027 TGATCCTTCGTAGGTCTCGTAGGGGCCCAATTTCTCTGCCAACTCACAACTCGCTTCTAG 1063086 Query 76009 CGCACCGTAATAAATTGTTTCGAAAATCT-TCTTATTAAGATCTTGCGCTTCAAGACTAT 76067 ||| | ||||| || || || || || | ||| |||| | ||| || || ||| | Sbjct 1063087 AGCAGCATAATACATAGTGTCAAATATTTCTCTGTTTAATCT-TTGGGCCTCCTCACTCT 1063145 Query 76068 CAAAAGGATAATGTAAA-AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATA 76126 |||| || ||| | | | ||| || ||||| || ||||| || ||||||||||||||| Sbjct 1063146 CAAATGGG-AATCTCATCAAAATGAAGGCATCAGCAAGTCCTTGGACTCCAATACCAATA 1063204 Query 76127 GGTCTATGTCTCTTATTGGAAATTTCAGC 76155 ||||| |||| | | ||||| ||| ||| Sbjct 1063205 GGTCTGTGTCGCATGTTGGACCTTTTAGC 1063233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712349241267840