Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq63207 123 6e-23 seq13065 95.1 3e-14 seq4946 87.8 4e-12 >seq63207 Length=555540 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | ||| ||||||||||| || ||||| ||||| |||||||| || | | ||| Sbjct 322007 CTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTTTGAATGTTGTAGTCCGAGAGGGTT 322066 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| || ||| || ||||| || | || ||||| || | | |||||| Sbjct 322067 CTACCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGAATTCCT 322126 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || |||||||| || ||||||| | || | | | || ||| || || || | | Sbjct 322127 TCTTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACCTCTAAA 322186 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || || ||||| || |||| |||||| Sbjct 322187 GTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCAT 322227 Score = 122 bits (134), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | ||| ||||||||||| || ||||| || || |||||||| || | | ||| Sbjct 379352 CTAAGACGGAGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTGTAGTCTGAGAGGGTT 379411 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| || ||| || ||||| || | || ||||| || | | |||||| Sbjct 379412 CTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCT 379471 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || |||||||| || ||||||| | || | | | || ||| || || || | | Sbjct 379472 TCTTTGTCTTGAATCTTGGCTTTGACATTTTCGATGGTATCAGAAGGTTCCACCTCCAAA 379531 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || || || ||||| || |||| ||||||| Sbjct 379532 GTGATGGTTTTACCAGTAAGGGTCTTTACAAAGATCTGCATT 379573 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | ||| ||||||||||| || ||||| || || |||||||| || | | ||| Sbjct 378896 CTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTT 378955 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| || ||| || ||||| || | || ||||| || | | |||||| Sbjct 378956 CTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCT 379015 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || |||||||| || |||||| | || | ||||||| ||||| ||||| Sbjct 379016 TCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGT 379075 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || || | ||| || || || | ||||| Sbjct 379076 GTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379116 Score = 105 bits (116), Expect = 2e-17 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | ||| ||||||||||| || ||||| || || ||||| || || | | ||| Sbjct 379124 CTAAGACGGAGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAGAGGGTT 379183 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| || ||| || ||||| || | || ||||| || | | |||||| Sbjct 379184 CTTCCATCTTCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGAGGAATTCCT 379243 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || |||||||| || |||||| | || | |||||| ||||| ||||| Sbjct 379244 TCTTTGTCTTGAATCTTGGCTTTGACGTTTTCAATTGAGTCTGATGGTTCTACCTCAAGT 379303 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || |||||||| || || | ||| || || || | ||||| Sbjct 379304 GTGATAGTTTTACCGGTCAAAGTTTTGACAAATATTTGCAT 379344 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||| || ||||| || || ||||| || || | | ||||| |||||| Sbjct 321773 AGTACAAGATGAAGTGTCGACTCCTTCTGAATGTTATAGTCTGAGAGGGTTCTACCATCT 321832 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || ||||| || | || ||||| || | | ||||||||| || ||| Sbjct 321833 TCAAGTTGTTTACCAGCGAAAATCAATCTTTGCTGATCTGGTGGGATTCCTTCTTTATCT 321892 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 |||| || ||||||| | || | |||||| ||||| ||||| || |||||| Sbjct 321893 TGAAGCTTAGATTTGACATTTTCAATTGCGTCTGATGGTTCTACCTCAAGTGTGATAGTT 321952 Query 152073 TTGCCCGT 152080 || || || Sbjct 321953 TTACCGGT 321960 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || ||||||||||| || ||||| || || ||||| || || | | || || |||||| Sbjct 378677 AGTACAAGATGAAGTGTTGACTCCTTCTGAATGTTATAGTCTGAGAGGGTCCTTCCATCT 378736 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || | || ||||| || | | |||||||| || ||| Sbjct 378737 TCAAGTTGTTTACCAGCAAAAATCAATCTTTGCTGATCTGGTGGAATTCCTTCTTTGTCT 378796 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || |||||| | || | ||||||| ||||| ||||| || |||||| Sbjct 378797 TGAATCTTGGCTTTGACGTTTTCAATTGTGTCTGATGGTTCTACCTCAAGTGTGATAGTT 378856 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || | ||| || || || | ||||| Sbjct 378857 TTACCTGTCAAAGTTTTGACAAATATTTGCAT 378888 >seq13065 Length=295510 Score = 95.1 bits (104), Expect = 3e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| | ||| || || || ||||| || || ||||| || | ||||| | |||||||| Sbjct 164071 GACTAAATGGAGGGTTGATTCTTTCTGAATATTGTAGTCTGACAAAGTACGACCATCTTC 164012 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||| ||||| || | ||||| || | | ||||||||||| || || Sbjct 164011 AAGTTGTTTACCGGCAAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTG 163952 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || || ||| | || | | ||||||| || || ||||| ||||| || || Sbjct 163951 GATCTTAGCCTTTACATTTTCAATGGTGTCTGATGGTTCAACCTCAAGTGTAATTGTCTT 163892 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || |||||||| | ||||| Sbjct 163891 TCCAGTAAGTGTTTTCACGAAAATTTGCAT 163862 >seq4946 Length=1295357 Score = 87.8 bits (96), Expect = 4e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 |||||||||||||| |||||||| || ||||||||||| |||| || ||||| |||||| Sbjct 125827 AGGACAAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAATGTTCTGCCATCT 125768 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || | ||| || || ||||| | ||||| ||||| | | |||||| Sbjct 125767 TCCAACTGTTTACCAGCAAAGATCAATCTCTGTTGGTCAGGGGGAATTCCT 125717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152850097051202