Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq45842 102 8e-17 seq1240 91.5 2e-13 >seq45842 Length=221613 Score = 102 bits (112), Expect = 8e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 23773 TCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCA 23832 ||| | || || |||||||| ||||| |||||||||||||||||||| || || || ||| Sbjct 80941 TCTTTGATGTAGGTATCAATGAGTAAGCTATACATTTCAGAATGAATGTTCTCCATGGCA 81000 Query 23833 ATCTGAAACCCATAAAAACATCTAGCTTC 23861 ||||| || |||||||||||||| ||||| Sbjct 81001 ATCTGGAAACCATAAAAACATCTGGCTTC 81029 Score = 91.5 bits (100), Expect = 2e-13 Identities = 78/94 (83%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 23205 CATAACACCCATTTTTTGATATTCCCCAACACGTCTT-TCGAAAAAATTTGTCTTACCCT 23263 ||| |||||||| || |||||||| ||||| | |||| || ||||| |||||||| || | Sbjct 76802 CATTACACCCATCTTCTGATATTCTCCAACTC-TCTTCTCAAAAAAGTTTGTCTTTCCTT 76860 Query 23264 CTAATGATATATTTTCCATAAAATCAAATGGATT 23297 |||||||||| | |||||| || ||||| ||||| Sbjct 76861 CTAATGATATCTGTTCCATGAAGTCAAAAGGATT 76894 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 23896 AAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAA 23955 || ||||| || ||||| ||||||||||| ||||| || ||||||| || | ||| ||| Sbjct 81554 AAGTTTTCATTTACAATTCCATCACTAGCTGCAAAAAAGGCAAGAATATGTGATATGAAA 81613 Query 23956 TGTCTTTCATCAGTTGATAATTTTTTCCAAT-CATTAATATCTTTTGATAAATCAACTTC 24014 |||| || ||| | | |||| ||||| | ||| ||||||||| ||||||||||| Sbjct 81614 TGTCGCTCTTCATCTTTCAGGTTTTCCCAATGCCCTAA-ATCTTTTGACAAATCAACTTC 81672 Query 24015 ATCAACTGTCCAAAA 24029 || | ||||| || Sbjct 81673 CTCTGCAGTCCAGAA 81687 >seq1240 Length=244183 Score = 91.5 bits (100), Expect = 2e-13 Identities = 203/302 (67%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 128604 GGAGGAATAAAATCTATATTTCTTATGGGATGTTATGATAAAGAAACAGATACATGGAAA 128663 || ||||| | || |||||| | ||||| ||||||| | | ||| | | || Sbjct 100126 GGTGGAATCATGTCCATATTTTTGTTGGGAGCTTATGATCCACATACAAAGAAATTTTGT 100185 Query 128664 ACTGTTACAAAATGCT-CAGGG--TTTAATGATGAAACATTAAAAGAATTACAATCAA-- 128718 ||||| |||||||| ||| | ||| | || | | | | | ||||||||| || Sbjct 100186 ACTGTAACAAAATGTGGCAGTGGATTTGACGACAAGAGACTGGAGGAATTACAAACAGAA 100245 Query 128719 -TTGATATGATTAAAATTAGTAAAAATAAAGATAAAATTCCAAATTGGTTAATTATTAAC 128777 | ||| | || ||||| |||||| || | |||| | |||| ||||||| ||||| Sbjct 100246 CTCGATGTCATAAAAATAAGTAAAGATCAGTCTAAAGTCCCAAGCTGGTTAAACATTAAA 100305 Query 128778 AGTATTCATTATCCGGATTTTATTATCAAAGATCCAAAATCATCTCCTGTTTGGGAAATA 128837 | || | ||| || ||| | ||| ||||||||| |||| ||||||||||| Sbjct 100306 AAGCATCTTGTTCCAGACTTTGTCGTCAGAGATCCAAAGATTGCTCCGATTTGGGAAATA 100365 Query 128838 ATTGGATATGAATTTACAAAATCACCATCTCATACAGCGAATGGAATATCAATTAGGTTT 128897 || ||| ||||||| ||| || | |||||| || |||| ||||| || || ||| Sbjct 100366 ATGGGAGCAGAATTTAGTAAAGCAGAAGTTCATACGGCTGATGGGATATCCATAAGATTT 100425 Query 128898 CC 128899 || Sbjct 100426 CC 100427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521059975686800