Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathymodiolus_20platifrons_20[genbank_20GCA_5F002080005.1_202017-04- 05] 65,662 sequences; 1,658,191,953 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq63207 174 4e-38 seq13065 158 3e-33 >seq63207 Length=555540 Score = 174 bits (192), Expect = 4e-38 Identities = 162/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||| | ||||| ||||| ||||| || ||||| ||| |||||| Sbjct 378885 CAAATATTTGTCAAAACTTTGACAGGTAAAACTATCACACTTGAGGTAGAACCATCAGAC 378826 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||||||| |||||||| |||||||||||||| || || || |||||| Sbjct 378825 ACAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAGCAA 378766 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || || || ||||| || |||||||||||||| || | || |||||| | Sbjct 378765 AGATTGATTTTTGCTGGTAAACAACTTGAAGATGGAAGGACCCTCTCAGACTATAACATT 378706 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || |||||||| |||||||| Sbjct 378705 CAGAAGGAGTCAACACTTCATCTTGT 378680 Score = 168 bits (186), Expect = 2e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||| | || || ||||| ||||| || ||||| ||| |||||| Sbjct 379113 CAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCAGAC 379054 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||||||| |||||||| |||||||||||||| ||||| || |||||| Sbjct 379053 ACAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAGCAA 378994 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || ||||| || ||||||||||| || || | || || ||| | Sbjct 378993 AGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACGCTCTCTGACTACAACATT 378934 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || |||||||| |||||||| Sbjct 378933 CAGAAGGAGTCAACACTTCATCTTGT 378908 Score = 168 bits (186), Expect = 2e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||| | || || ||||| ||||| || ||||| ||| |||||| Sbjct 379341 CAAATATTTGTCAAAACTTTGACCGGTAAAACTATCACACTTGAGGTAGAACCATCAGAC 379282 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | || || ||||||||| |||||||| |||||||||||||| ||||| || |||||| Sbjct 379281 TCAATTGAAAACGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAGCAA 379222 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || ||||| || ||||||||||| || || | || |||||| | Sbjct 379221 AGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCAGACTATAACATT 379162 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || |||||||| |||||||| Sbjct 379161 CAGAAGGAGTCAACACTTCATCTTGT 379136 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || ||||| ||||| | ||||||||| || || Sbjct 322224 CAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCACTTTAGAGGTGGAACCTTCTGAT 322165 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| |||||||| |||||||||||||| || || || |||||| Sbjct 322164 ACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCACCAGATCAGCAA 322105 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || ||||| || |||||||| || || || | || || ||| | Sbjct 322104 AGATTGATTTTCGCTGGTAAACAACTTGAAGATGGTAGAACCCTCTCGGACTACAACATT 322045 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| || |||||||| |||||||| Sbjct 322044 CAAAAGGAGTCAACACTTCATCTTGT 322019 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || ||||| ||||| | ||||||||| || || Sbjct 379569 CAGATCTTTGTAAAGACCCTTACTGGTAAAACCATCACTTTGGAGGTGGAACCTTCTGAT 379510 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| || |||||| |||||||| |||||||||||||| ||||| || |||||| Sbjct 379509 ACCATCGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCTCCAGATCAGCAA 379450 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| || ||||| || ||||||||||| || || | || || ||| | Sbjct 379449 AGATTGATTTTCGCTGGTAAACAACTTGAAGATGGAAGAACCCTCTCAGACTACAACATT 379390 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || ||||| |||||||| Sbjct 379389 CAGAAGGAGTCGACACTTCATCTTGT 379364 Score = 131 bits (144), Expect = 4e-25 Identities = 140/185 (76%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || ||||| ||||| || ||||| ||| |||||| | || || || |||||| Sbjct 321960 ACCGGTAAAACTATCACACTTGAGGTAGAACCATCAGACGCAATTGAAAATGTCAAATCT 321901 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||| |||| || |||||||||||||| || || |||||| || | || ||||| || ||| Sbjct 321900 AAGCTTCAAGATAAAGAAGGAATCCCACCAGATCAGCAAAGATTGATTTTCGCTGGTAAA 321841 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || |||||||| || || || | || |||||| | || || || || ||||| ||| Sbjct 321840 CAACTTGAAGATGGTAGAACCCTCTCAGACTATAACATTCAGAAGGAGTCGACACTTCAT 321781 Query 178125 CTTGT 178129 ||||| Sbjct 321780 CTTGT 321776 Score = 109 bits (120), Expect = 1e-18 Identities = 149/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || | |||||| | || || ||||| ||||| || | ||| ||| ||||| Sbjct 321753 CAAATATTTATCAAAACTTTGACCGGTAAAACTATCACACTTGCGGTAGAACCAGCAGAC 321694 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || |||||| |||||||| |||||||||||||| || | || |||||| Sbjct 321693 ACAATTGAAAATGTCAAAGCCAAGATTCAAGACAAAGAAGGAATTCCATCAGATCAGCAA 321634 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | | ||||| || || || || || |||||| |||| | || |||||| | Sbjct 321633 AGATTGCTTTTCGCTGGTAAGCAACTTCAATATGGAA-TCCTCT--CGGACTATAACATT 321577 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || | ||| |||||||| Sbjct 321576 CAGAAGGAGTCGATACTTCATCTTGT 321551 >seq13065 Length=295510 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| || || ||||| || || || || ||||| ||| |||||| Sbjct 164093 CAAATTTTCGTGAAAACACTTACTGGAAAGACAATTACACTTGAGGTTGAACCATCAGAC 164152 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||| ||||||||||||||||| || || || |||||| Sbjct 164153 ACCATTGAAAATGTAAAGGCTAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAGCAA 164212 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| ||||| || |||||||| | ||| | | || || ||| | Sbjct 164213 CGTCTCATCTTTGCCGGTAAACAACTTGAAGATGGCCGTACTTTGTCAGACTACAACATT 164272 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || |||||||| || || ||| | || ||| Sbjct 164273 CAGAAAGAATCGACCCTCCATTTAGTCTTG 164302 Score = 154 bits (170), Expect = 4e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||||||||| || || ||||| || || || || ||||| ||| |||||| Sbjct 163865 CAAATTTTCGTGAAAACACTTACTGGAAAGACAATTACACTTGAGGTTGAACCATCAGAC 163924 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || ||||| |||||||| |||||||| || || || |||||| Sbjct 163925 ACCATTGAAAATGTAAAGGCTAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAGCAA 163984 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| ||||| || |||||||| | ||| | | || || || | Sbjct 163985 CGTCTCATCTTTGCCGGTAAACAACTTGAAGATGGTCGTACTTTGTCAGACTACAATATT 164044 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||||||||||| || ||| | || ||| Sbjct 164045 CAGAAAGAATCAACCCTCCATTTAGTCTTG 164074 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || |||||||| ||||||||||| || ||||| | ||||| ||| |||||| Sbjct 163637 CAGATCTTTGTGAAAACACTCACAGGAAAGACCATCACTTTGGAGGTTGAACCTTCAGAC 163696 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || || || || || || |||||||||||||| || || || |||||| Sbjct 163697 ACCATTGAAAATGTAAAGGCTAAAATCCAAGACAAAGAAGGAATTCCCCCAGATCAGCAA 163756 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| ||||| || || || |||||||| | ||| | | || || || | Sbjct 163757 CGTCTCATCTTTGCCGGTAAGCAACTTGAAGATGGCCGTACTTTGTCAGACTACAATATT 163816 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || ||||||||||| || ||| | || ||| Sbjct 163817 CAGAAAGAATCAACCCTCCATTTAGTCTTG 163846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202718507712428