Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Biomphalaria_20glabrata_20[refseq_20GCF_5F000457365.1_202013-09-06] 331,401 sequences; 916,388,084 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq219765 113 4e-20 seq37740 93.3 4e-14 seq243752 87.8 2e-12 >seq219765 Length=875325 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | |||||| | || ||||| |||||||| ||| || ||| || Sbjct 73343 ATGCAGATCTTCGTAAAAACACTCACAGGCAAGACCATTACACTTGAAGTTGAGCCCTCA 73284 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || ||||| || |||||||| | || ||||||| Sbjct 73283 GACACCATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAA 73224 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || |||||||| ||||||||||| |||||| | ||| || | |||||||| Sbjct 73223 CAGCGTCTCATCTTTGCTGGCAAACAACTTGAAGATGGCCGCACTTTGTCAGATTACAAC 73164 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| ||||| ||||| ||| |||| | || || ||||||| Sbjct 73163 ATTCAGAAAGAATCAACTCTGCACTTGGTCCTTCGTCTAAGAGGAGG 73117 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || | || || ||||| |||||| || ||||| || Sbjct 73571 ATGCAGATTTTTGTCAAGACCCTCACTGGGAAAACTATTACCCTAGAGGTTGAACCATCA 73512 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||||||| || |||||||| | || ||||||| Sbjct 73511 GATACCATTGAAAATGTCAAGGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 73452 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | || || ||||| ||||||||||| |||||| | ||| || | |||||||| Sbjct 73451 CAGCGTCTCATTTTTGCTGGCAAACAACTTGAAGATGGCCGCACTTTGTCAGATTACAAC 73392 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| ||||| ||||| ||| |||| | || || ||||||| Sbjct 73391 ATTCAGAAAGAATCGACTCTGCACTTGGTCCTTCGTCTAAGAGGAGG 73345 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/204 (70%), Gaps = 1/204 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACG-GGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||| || ||| | |||||| | || ||||| |||||||| ||| || ||| | Sbjct 73115 ATGCAGATCTTCGTAAAAACACTCACAAGGCAAGACCATTACACTTGAAGTTGAGCCCTC 73056 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | || | || ||||| || |||||||| | || |||||| Sbjct 73055 AGACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCA 72996 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 ||| | || |||||||| ||||||||||| |||||| | ||| || | ||||| || Sbjct 72995 ACAGCGTCTCATCTTTGCTGGCAAACAACTTGAAGATGGCCGAACCTTGTCTGATTATAA 72936 Query 29141 TATTCAGAAGGAATCTACTCTTCA 29164 |||||||| ||||| || || || Sbjct 72935 CATTCAGAAAGAATCAACCCTGCA 72912 >seq37740 Length=474 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| | ||||||||||| || ||||| ||||| ||| ||| || | Sbjct 305 ATGCAAATTTTCGTGAAAACATTGACTGGAAAAACTATTACTTTGGAAGTAGAAGCCTCT 246 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | || | ||| || ||| || |||||||| | || |||||| Sbjct 245 GATACGATTGAGAATGTGAAGGCTAAGATTCAAGACAAAGAAGGAATCCCACCAGATCAG 186 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 || | || |||||||| || |||||||| |||||| || | || | | || |||| Sbjct 185 CAGCGGCTCATCTTTGCAGGGAAACAACTTGAAGATGGTCGTACCCTTT--CGGACTACA 128 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | || || |||||||| |||||||| | ||| | || | || ||||| Sbjct 127 ACATCCAAAAGGAATCGACTCTTCATCTAGTGCTCCGTCTTCGTGGAGG 79 >seq243752 Length=40230 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || | || ||||| |||||||| || || ||| || Sbjct 7827 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACACTTGAGGTTGAGCCCTCA 7768 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | || ||||| ||||||||||| | || ||||||| Sbjct 7767 GACACCATTGACAATGTCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCACCAGATCAA 7708 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | ||||| ||||| || |||||||| |||||| | ||| || | |||||||| Sbjct 7707 CAGCGTCTTATTTTTGCTGGTAAACAACTTGAAGATGGCCGCACTTTGTCAGATTACAAC 7648 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 |||||||| ||||| || || || Sbjct 7647 ATTCAGAAAGAATCGACACTGCA 7625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426605972446655