Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Biomphalaria_20glabrata_20[refseq_20GCF_5F000457365.1_202013-09-06] 331,401 sequences; 916,388,084 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq219765 150 3e-31 seq243752 131 3e-25 seq810 95.1 2e-14 >seq219765 Length=875325 Score = 150 bits (166), Expect = 3e-31 Identities = 175/235 (74%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 124535 TACA-ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAG 124593 |||| ||||| || ||| | ||||| || || || |||||||| || ||||| ||||| Sbjct 73576 TACAGATGCAGATTTTTGTCAAGACCCTCACTGGGAAAACTATTACCCTAGAGGTTGAAC 73517 Query 124594 CAAATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 || ||||| ||| ||| | || ||||||||||| |||||||| || || || | Sbjct 73516 CATCAGATACCATTGAAAATGTCAAGGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAG 73457 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 ||||||| | || |||||||| || |||||| | || ||| | || || || ||||| Sbjct 73456 ATCAACAGCGTCTCATTTTTGCTGGCAAACAACTTGAAGATGGCCGCACTTTGTCAGATT 73397 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||||| |||||||| ||| |||| ||||| | ||| || |||| ||||| Sbjct 73396 ACAACATTCAGAAAGAATCGACTCTGCACTTGGTCCTTCGTCTAAGAGGAGGTAT 73342 Score = 127 bits (140), Expect = 3e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || |||| ||||| |||||||| || || || | || |||| | Sbjct 73343 ATGCAGATCTTCGTAAAAACACTCACAGGCAAGACCATTACACTTGAAGTTGAGCCCTCA 73284 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||| ||||| |||||||| || || || |||||| Sbjct 73283 GACACCATTGAAAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCAA 73224 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || |||||| | || ||| | || || || |||||| || Sbjct 73223 CAGCGTCTCATCTTTGCTGGCAAACAACTTGAAGATGGCCGCACTTTGTCAGATTACAAC 73164 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| |||||||||||| |||| ||||| | ||| || |||| ||||| Sbjct 73163 ATTCAGAAAGAATCAACTCTGCACTTGGTCCTTCGTCTAAGAGGAGGTAT 73114 Score = 116 bits (128), Expect = 6e-21 Identities = 169/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACA-GGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||| || || |||| ||||| ||| ||||| || || || | || |||| | Sbjct 73115 ATGCAGATCTTCGTAAAAACACTCACAAGGCAAGACCATTACACTTGAAGTTGAGCCCTC 73056 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | ||| ||||| ||||| |||||||| || || || ||||| Sbjct 73055 AGACACCATTGAGAATGTCAAAGCCAAAATCCAAGACAAAGAAGGCATTCCTCCAGATCA 72996 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || ||||| || |||||| | || ||| | ||||| || |||||||| Sbjct 72995 ACAGCGTCTCATCTTTGCTGGCAAACAACTTGAAGATGGCCGAACCTTGTCTGATTATAA 72936 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG-TATTAAA 124772 ||||| ||||||||||| ||||||| || | ||| | || ||||| |||| || Sbjct 72935 CATTCAGAAAGAATCAACCCTGCATTTAGTGCTTCGTCTCCGTGGTGGCTATTGAA 72880 >seq243752 Length=40230 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || || | ||| |||| | Sbjct 7827 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATTACACTTGAGGTTGAGCCCTCA 7768 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||| |||||||||||||| || ||||| |||||| Sbjct 7767 GACACCATTGACAATGTCAAAGCTAAAATCCAAGATAAAGAAGGAATTCCACCAGATCAA 7708 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | ||||||||||| || |||||| | || ||| | || || || |||||| || Sbjct 7707 CAGCGTCTTATTTTTGCTGGTAAACAACTTGAAGATGGCCGCACTTTGTCAGATTACAAC 7648 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 ||||| |||||||| || ||||||| || | ||| | ||||||| Sbjct 7647 ATTCAGAAAGAATCGACACTGCATTTAGTCCTTCGTCTGAGAGGTGG 7601 Score = 107 bits (118), Expect = 3e-18 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 124553 AAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAA 124612 |||| ||| || ||||| || || || | ||| |||| || || || ||| || Sbjct 8039 AAAGCCAC--ACTGGCAAGACCATTACACTTGAGGTTGAGCCATCAGACACCATTGACAA 7982 Query 124613 TTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTT 124672 | | ||| ||||| ||||| |||||||| || || || ||||| || | || || || Sbjct 7981 TGTCAAAGCTAAAATCCAAGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTCATCTT 7922 Query 124673 TGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATC 124732 ||| || |||||| | || ||| | || ||||| |||||| || ||||| |||||||| Sbjct 7921 TGCTGGCAAACAACTTGAAGATGGCCGCACATTGTCAGATTACAACATTCAGAAAGAATC 7862 Query 124733 AACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| | || ||||| | ||| | |||||||||| Sbjct 7861 AACACTACACTTGGTCCTTCGTCTGAGAGGTGGTAT 7826 >seq810 Length=368314 Score = 95.1 bits (104), Expect = 2e-14 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 202868 CCAACATATCCATTTGGATCACGTCCATCTATAAAATATTTATCATTTAAATNNNNNNNN 202927 || || || ||||| ||||| || ||||| | | |||||| ||||| |||| Sbjct 132542 CCCACGTAGCCATTAGGATCTCGGCCATCAAGATTATATTTGTCATTCAAATAAATGGCA 132483 Query 202928 NNNNNNAATGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATT 202987 || || | ||||||||||| ||||| || ||||| || || |||||||||||| Sbjct 132482 TCTGCCAAAGCATTCTCTGGTGATTTGGTCCACTCCAATATCTTCTTGGCCCAATACATT 132423 Query 202988 CTTAAATATCCATGCATTTTACC 203010 || || |||||||||||||||| Sbjct 132422 CTCAAGAATCCATGCATTTTACC 132400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752326514076800