Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Biomphalaria_20glabrata_20[refseq_20GCF_5F000457365.1_202013-09-06] 331,401 sequences; 916,388,084 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq168112 147 3e-30 seq14293 114 2e-20 >seq168112 Length=81752 Score = 147 bits (162), Expect = 3e-30 Identities = 152/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 42449 AAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 42508 |||||||| |||||||| || ||||| || ||||| || |||| ||| ||| |||||| Sbjct 32874 AAATTTTCATTCACTATCCCATCACTTGCAGCAAAGAATGCCAGTACGTGTGAGATAAAA 32815 Query 42509 TATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCT 42568 | ||||| || ||| | | || | ||| | || | ||||||||| | || || ||| Sbjct 32814 TGCTTTTCTTCTGGTTTCAGCTTCTCCCAGTGATCAAGATCTTTAGACAAGTCCACCTCT 32755 Query 42569 TCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGA 42628 ||| | ||||| ||||||||||| || ||||| ||||| | ||| || ||||| || ||| Sbjct 32754 TCTGCTGTCCAGAATGATGCTTCAGCTTTTTTGTACATCTGCCAAATGTCATGGTACTGA 32695 Query 42629 ATTGGGAAAATAACAAATC 42647 ||||| || | |||||||| Sbjct 32694 ATTGGAAATAAAACAAATC 32676 Score = 93.3 bits (102), Expect = 6e-14 Identities = 109/145 (75%), Gaps = 8/145 (6%) Strand=Plus/Minus Query 41716 TCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA-GA------CATAACTC 41768 |||||||||||| ||||| ||| || |||| | || ||| || ||| || | Sbjct 35409 TCTTTAAAAGTCTTCATCTGTAGAGAACTGATGG-CTAGTTGGCGATTTGTTCATTACCC 35351 Query 41769 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATA 41828 |||| || || |||||||| || ||||| || ||||| ||||||||||||||||||| Sbjct 35350 CCATCTTCTGATATTCACCAACTTTCTTTTCAAAGAAATTTGTCTTTCCTTCCAATGATA 35291 Query 41829 TATTTTCCATGAAATCAAACGGATT 41853 | | |||||||| ||||| ||||| Sbjct 35290 TGTGCTCCATGAAGTCAAATGGATT 35266 >seq14293 Length=520737 Score = 114 bits (126), Expect = 2e-20 Identities = 164/226 (73%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 71944 TCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGAC 72003 || || || || |||||| ||| | | | ||||||||||| || |||||||| || | | Sbjct 326125 TCAAATTCTTCACCCCAAACATCGGCAAGCCCAGGACATTCGTTAGGACACATTAAAGTC 326184 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAA 72062 || || ||| || | || || ||| ||||| ||||||||||| || || || ||| Sbjct 326185 CAGTCGGCATTCTCCTCAACACGGCGCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAA 326244 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCA 72121 ||||| |||| || || || || || || ||||| || |||||| ||||| ||| | | Sbjct 326245 -AGATCCCTGGCTCGTTGTTCTTCTTTACCAGTATTTTTCTTTAAG-TCGAGAAACTCAA 326302 Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 72167 || ||| | |||||| ||||| || || || || | | |||| || Sbjct 326303 AAACATCTGCATGCCATGGTTCTAAATAGATAGCAAAAGCTCCTGG 326348 Score = 102 bits (112), Expect = 1e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 71128 AGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTG 71187 |||||| |||| || | || || ||||| ||||| || | | || |||||||| ||| Sbjct 324721 AGATGATGATTGACAATCTGGAACTCTCCCGACAAAACACGCCTAGAATAAATATTGCTG 324780 Query 71188 GTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATA 71247 || || | || | ||||| || ||||| | ||||||||||||||| || || ||||| Sbjct 324781 GTGTAAGCCTCTATGGACTCGTTGTTTCCAAGAATTTGAGCAGTTGAGGCTGTAGGCATT 324840 Query 71248 GGTGCCACCAATAGACTATTTCTAAGACCAT 71278 || |||| || ||||| ||||| | ||||| Sbjct 324841 GGAGCCATCAGCAGACTGTTTCTGACACCAT 324871 Score = 102 bits (112), Expect = 1e-16 Identities = 115/153 (75%), Gaps = 1/153 (1%) Strand=Plus/Plus Query 72772 TTTTTTGTT-TCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATC 72830 ||| ||| | || ||||||| ||| || || || |||| ||||| || || |||||||| Sbjct 329155 TTTCTTGCTCTCTTTGTGTAAATTAGAAACAGCGATTCGCGCGGCCAGGATAGCATAATC 329214 Query 72831 TGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGT 72890 |||||||| ||||| ||| |||||| |||||||||||| | |||| | || || || Sbjct 329215 TGGATGTTTCGTAGTCATAGTCGCTGCTGTTTCTGCTGCCAAATTGTCGAGCTCAACAGT 329274 Query 72891 TGTTACTCCATTATATATTCCTTGGATAACCTT 72923 |||||| || | || | ||| | ||| || || Sbjct 329275 TGTTACACCTTGGTACAATCCATTGATGACTTT 329307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668358997474760