Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Biomphalaria_20glabrata_20[refseq_20GCF_5F000457365.1_202013-09-06] 331,401 sequences; 916,388,084 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq219765 114 9e-21 seq243752 96.9 3e-15 seq37740 93.3 3e-14 seq129645 87.8 1e-12 >seq219765 Length=875325 Score = 114 bits (126), Expect = 9e-21 Identities = 160/223 (72%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || ||||| || ||||||||||| | | | | | ||||| Sbjct 73363 ACCAAGTGCAGAGTCGATTCTTTCTGAATGTTGTAATCTGACAAAGTGCGGCCATCTTCA 73422 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| | || | ||| ||||| || ||||| ||||||||||| | Sbjct 73423 AGTTGTTTGCCAGCAAAAATGAGACGCTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGA 73482 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 ||||| ||| ||| |||| |||||||| ||| || |||| |||||| ||||| Sbjct 73483 ATTTTTGCCTTGACATTTTCAATGGTATCTGATGGTTCAACCTCTAGGGTAATAGTTTTC 73542 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAATAAAA 15377 || || || || || |||||||| ||||| | | ||| ||||| Sbjct 73543 CCAGTGAGGGTCTTGACAAAAATCTGCATCTGT-AAATTAAAA 73584 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || ||||| || ||||||||||| | | | | | ||||| Sbjct 73135 ACCAAGTGCAGAGTTGATTCTTTCTGAATGTTGTAATCTGACAAAGTGCGGCCATCTTCA 73194 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| | || | ||| ||||| || ||||| ||||||||||| Sbjct 73195 AGTTGTTTGCCAGCAAAGATGAGACGCTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGG 73254 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || ||| |||| ||||| || || || || | |||||||| || Sbjct 73255 ATTTTGGCTTTGACATTTTCAATGGTGTCTGAGGGCTCAACTTCAAGTGTAATGGTCTTG 73314 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||||| || |||||||| || || |||||| Sbjct 73315 CCTGTGAGTGTTTTTACGAAGATCTGCATA 73344 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/211 (70%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||| ||||| || ||||| || ||||| ||||| | ||| | ||||| Sbjct 72906 ACTAAATGCAGGGTTGATTCTTTCTGAATGTTATAATCAGACAAGGTTCGGCCATCTTCA 72965 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||||||||| | || | ||| ||||| || ||||| ||||||||||| Sbjct 72966 AGTTGTTTGCCAGCAAAGATGAGACGCTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGG 73025 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || ||| | || ||||| || || || || | |||||||| || Sbjct 73026 ATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGCTCAACTTCAAGTGTAATGGTCTTG 73085 Query 15335 CC-TGTCAGAGTTTTTACAAAAATTTGCATA 15364 || ||| || |||||||| || || |||||| Sbjct 73086 CCTTGTGAGTGTTTTTACGAAGATCTGCATA 73116 >seq243752 Length=40230 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 15136 GCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCT 15195 ||||||||||| | | |||||||| || || || ||||| || ||||||||||| Sbjct 7600 GCCACCTCTCAGACGAAGGACTAAATGCAGTGTCGATTCTTTCTGAATGTTGTAATCTGA 7659 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 | | | | | ||||| | |||||| ||||| | || | ||| ||||| || ||| Sbjct 7660 CAAAGTGCGGCCATCTTCAAGTTGTTTACCAGCAAAAATAAGACGCTGTTGATCTGGTGG 7719 Query 15256 AATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||||||||||| || ||||| ||| || ||| | || ||||| || || | Sbjct 7720 AATTCCTTCTTTATCTTGGATTTTAGCT-TTGACATTGTCAATGGTGTCTGAGGGCTCAA 7778 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || | |||||||| || || || || || || ||||| || |||||| Sbjct 7779 CCTCAAGTGTAATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATA 7828 >seq37740 Length=474 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||| |||||| || || || ||||| |||||||| || || | | | ||||| Sbjct 97 ACTAGATGAAGAGTCGATTCCTTTTGGATGTTGTAGTCCGAAAGGGTACGACCATCTTCA 156 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| || || | || | || || || || ||| |||||||||||||| | Sbjct 157 AGTTGTTTCCCTGCAAAGATGAGCCGCTGCTGATCTGGTGGGATTCCTTCTTTGTCTTGA 216 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || || ||||| |||||| || || ||||| ||||| Sbjct 217 ATCTTAGCCTTCACATTCTCAATCGTATCAGAGGCTTCTACTTCCAAAGTAATAGTTTTT 276 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| ||||| || ||||||||||| Sbjct 277 CCAGTCAATGTTTTCACGAAAATTTGCAT 305 >seq129645 Length=3385 Score = 87.8 bits (96), Expect = 1e-12 Identities = 109/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Minus Query 15230 TATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTTACA 15289 ||||| | ||| ||||| || ||||| ||||||||||| |||||| ||| ||| Sbjct 705 TATATGAGACGCTGTTGATCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTGCCTTGACA 646 Query 15290 ATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTT 15349 |||| |||||||| ||| || |||| |||||| ||||| || || || || || Sbjct 645 TTTTCAATGGTATCTGATGGTTCAACCTCTAGGGTAATAGTTTTCCCAGTGAGGGTCTTG 586 Query 15350 ACAAAAATTTGCATATTTGAAAATAAAA 15377 |||||||| ||||| | | ||| ||||| Sbjct 585 ACAAAAATCTGCATCTGT-AAATTAAAA 559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360716376433341