Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Biomphalaria_20glabrata_20[refseq_20GCF_5F000457365.1_202013-09-06] 331,401 sequences; 916,388,084 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq44640 170 3e-38 seq13214 168 1e-37 seq116849 113 7e-21 seq280309 96.9 5e-16 seq227275 96.9 5e-16 >seq44640 Length=454 Score = 170 bits (188), Expect = 3e-38 Identities = 185/243 (76%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| | || ||||| || |||||||| |||||||||||||| || || Sbjct 351 GCCAAGCGCCATCGCAAGGTC-CTTCGCGACAACATCCAGGGAATCACCAAGCCCGCCAT 293 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || |||||||| |||||||| || |||||||| |||| ||| | |||| || |||| Sbjct 292 TCGCCGTCTGGCCCGTCGTGGAGGTGTCAAGCGCATCTCCGGACTCATCTACGATGAGAC 233 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || || | |||||||||||| ||| ||| ||| | || || || ||| || || Sbjct 232 GCGCAGCGTGCTCAAGATCTTCCTCGAGAACGTGATCAAAGACGCCGTCACCTACACGGA 173 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| ||||||| || | || || || || Sbjct 172 GCACGCCAAGAGGAAGACCGTCACCGCCATGGATGTCGTCTACGCCCTCAAGCGCCAGGG 113 Query 16672 CCG 16674 ||| Sbjct 112 CCG 110 >seq13214 Length=562 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| | | || ||||||||||| || ||||| ||||| || || Sbjct 308 CGCCAAGCGTCACCGCAAAGTATTGCGTGATAACATCCAGGGTATCACTAAGCCTGCCAT 249 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||||||| ||||| | ||||| ||||| ||| ||||||| || |||||||||| | Sbjct 248 CCGTCGTCTTGCTCGCAGAGGTGGTGTCAAACGTATCTCTGGTCTGATCTATGAAGAAAC 189 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| ||||| | ||||| | | || ||| ||||| || ||| || || Sbjct 188 CAGAGGTGTCCTGAAGGTTTTCCTTGAAAATGTCATCAGGGATGCCGTCACCTACACTGA 129 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | ||||||||||| | |||||| | ||||| ||||||||||| ||||| Sbjct 128 GCATGCCAAGAGGAAGACTGTCACTGCTATGGATGTGGTCTACGCATTGAAACGCCAAGG 69 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || ||||| ||||| Sbjct 68 ACGTACCCTGTACGGCTTTGGTGGTTAA 41 >seq116849 Length=301 Score = 113 bits (124), Expect = 7e-21 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 16456 TCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGG 16515 ||| ||||||||||| || ||||| ||||| || ||||||||||| ||||| | ||||| Sbjct 119 TCGGGATAACATCCAGGGTATCACTAAGCCTGCCATCCGTCGTCTTGCTCGCAGAGGTGG 178 Query 16516 AGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCT 16575 ||||| ||| ||||||| || |||||||||| | | | ||| | ||| | ||||| Sbjct 179 TGTCAAACGTATCTCTGGTCTGATCTATGAAGAAACCAGAGGTGTCCTAAAGGTTTTCCT 238 Query 16576 CAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCAC 16635 | | || ||| ||||| || ||| || ||||| || || | ||||||||||| Sbjct 239 TGAAAATGTCATCAGGGATGCCGTCACCTACACTGAGCATGCCAAGAGGAAGACTGTCAC 298 >seq280309 Length=3913 Score = 96.9 bits (106), Expect = 5e-16 Identities = 181/268 (68%), Gaps = 15/268 (6%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| | | || ||||||||||| || ||||| ||| Sbjct 1898 CGCCAAGCGTCACCGCAAAGTATTGCGTGATAACATCCAGGGTATCACTAAG-------- 1847 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| | ||||| ||||| ||| ||||||| || |||| ||||| | Sbjct 1846 ------TCTTGCTCGCAGAGGTGGTGTCAAACGTATCTCTGGTCTGATCTACGAAGAAAC 1793 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| | ||| | ||| | || | || | | ||||| || || || || Sbjct 1792 CAGAGGTGTCCTAAAGGTTTTCTTGAAAAT-GTCACCAGGGATGCCATCACTTAAACTGA 1734 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || | ||||||||||| | |||||| | ||||| |||||||||| ||||| Sbjct 1733 GCATGCCAAGAGGAAGACTGTCACTGCTATGGATGTGGTCTACGCATTGAAACACCAAGG 1674 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || ||||| ||||| Sbjct 1673 TCGTACCCTGTACGGCTTTGGTGGTTAA 1646 >seq227275 Length=39397 Score = 96.9 bits (106), Expect = 5e-16 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || ||||| |||| | | || ||||||||||| || ||||| ||||| || ||| Sbjct 39266 GCCAAACGTCACCGCAAAGTATTGCGTGATAACATCCAGGGTATCACAAAGCCTGCCATC 39325 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGA 16548 |||||||| ||||| | ||||| ||||| ||| ||||||| || |||||||||| Sbjct 39326 CGTCGTCTTGCTCGCAGAGGTGGTGTCAAACGTATCTCTGGTCTGATCTATGAAGA 39381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78772197745893