Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Biomphalaria_20glabrata_20[refseq_20GCF_5F000457365.1_202013-09-06] 331,401 sequences; 916,388,084 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq219765 156 3e-33 seq37740 143 2e-29 seq243752 136 3e-27 seq129645 95.1 9e-15 seq642 95.1 9e-15 >seq219765 Length=875325 Score = 156 bits (172), Expect = 3e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | ||| || ||||| || || || |||||||| |||||||| ||||| | Sbjct 73345 CCTCCTCTTAGACGAAGGACCAAGTGCAGAGTCGATTCTTTCTGAATGTTGTAATCTGAC 73404 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || ||||||||||||||| | || | | || ||||| || ||| Sbjct 73405 AAAGTGCGGCCATCTTCAAGTTGTTTGCCAGCAAAAATGAGACGCTGTTGATCTGGAGGA 73464 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || ||||||||||| |||||||| |||||| |||| | || || || |||| || Sbjct 73465 ATGCCTTCTTTGTCTTG-AATTTTTGCCTTGACATTTTCAATGGTATCTGATGGTTCAAC 73523 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || |||||||| ||||| | ||| || ||||| |||||||| Sbjct 73524 CTCTAGGGTAATAGTTTTCCCAGTGAGGGTCTTGACAAAAATCTGCAT 73571 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || | ||| || ||||| || || || |||||||| |||||||| ||||| | Sbjct 73117 CCTCCTCTTAGACGAAGGACCAAGTGCAGAGTTGATTCTTTCTGAATGTTGTAATCTGAC 73176 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || ||||||||||||||| | || | | || ||||| || ||| Sbjct 73177 AAAGTGCGGCCATCTTCAAGTTGTTTGCCAGCAAAGATGAGACGCTGTTGATCTGGAGGA 73236 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||||||||| | ||| ||||||| |||| | ||||| || | || ||| Sbjct 73237 ATGCCTTCTTTGTCTTGGATTTTGGCTTTGACATTTTCAATGGTGTCTGAGGGCTCAACT 73296 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||| || | ||||| || || |||||||| Sbjct 73297 TCAAGTGTAATGGTCTTGCCTGTGAGTGTTTTTACGAAGATCTGCAT 73343 Score = 140 bits (154), Expect = 2e-28 Identities = 162/217 (75%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| ||||| || || |||||||| |||||||||||||| | | ||| || Sbjct 72899 ACGAAGCACTAAATGCAGGGTTGATTCTTTCTGAATGTTATAATCAGACAAGGTTCGGCC 72958 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||||||||||||| | || | | || ||||| || ||||| || ||||| Sbjct 72959 ATCTTCAAGTTGTTTGCCAGCAAAGATGAGACGCTGTTGATCTGGAGGAATGCCTTCTTT 73018 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | ||| ||||||| | || | ||||| || | || |||||||| || || Sbjct 73019 GTCTTGGATTTTGGCTTTGACATTCTCAATGGTGTCTGAGGGCTCAACTTCAAGTGTAAT 73078 Query 29751 AGTTTTGCC-AGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||||| || || |||||||| Sbjct 73079 GGTCTTGCCTTGTGAGTGTTTTTACGAAGATCTGCAT 73115 >seq37740 Length=474 Score = 143 bits (158), Expect = 2e-29 Identities = 175/235 (74%), Gaps = 3/235 (1%) Strand=Plus/Plus Query 29553 TCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATA 29612 |||||| ||||| | | ||| ||||| | |||||| || ||||| ||||| ||||| || Sbjct 73 TCGTTG-CCTCCACGAAGACGGAGCACTAGATGAAGAGTCGATTCCTTTTGGATGTTGTA 131 Query 29613 ATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATC 29672 |||| || ||| ||| ||| || |||||||| || ||| | || | | |||||||| Sbjct 132 GTCCGAAAGGGTACGACCATCTTCAAGTTGTTTCCCTGCAAAGATGAGCCGCTGCTGATC 191 Query 29673 CGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAA 29731 || || || || ||||||||||| ||| || | || ||| | || | || ||||| Sbjct 192 TGGTGGGATTCCTTCTTTGTCTTG-AATCTTAGCCTTCACATTCTCAATCGTATCAGAGG 250 Query 29732 GTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| | ||| |||||||| ||||| || ||||| || || || ||||| Sbjct 251 CTTCTACTTCCAAAGTAATAGTTTTTCCAGTCAATGTTTTCACGAAAATTTGCAT 305 >seq243752 Length=40230 Score = 136 bits (150), Expect = 3e-27 Identities = 154/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 || || |||| ||| || ||||| || || || |||||||| |||||||| ||||| | | Sbjct 7829 CCACCTCTCAGACGAAGGACCAAGTGTAGTGTTGATTCTTTCTGAATGTTGTAATCTGAC 7888 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| |||| ||| || ||||||||||||||| | || | | |||||||| || || Sbjct 7889 AATG-TGCGGCCATCTTCAAGTTGTTTGCCAGCAAAGATGAGACGCTGCTGATCTGGAGG 7947 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| || ||||||||||| | ||| ||||||| | || | ||||| || | || || Sbjct 7948 AATTCCTTCTTTGTCTTGGATTTTAGCTTTGACATTGTCAATGGTGTCTGATGGCTCAAC 8007 Query 29739 TTCAAGAGTTATAGTTTTGCCAGT 29762 ||||| || || || |||||||| Sbjct 8008 CTCAAGTGTAATGGTCTTGCCAGT 8031 >seq129645 Length=3385 Score = 95.1 bits (104), Expect = 9e-15 Identities = 104/136 (76%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 29652 ATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGA 29710 |||||| | | || ||||| || ||||| || ||||||||||| |||||||| |||| Sbjct 706 ATATATGAGACGCTGTTGATCTGGAGGAATGCCTTCTTTGTCTTG-AATTTTTGCCTTGA 648 Query 29711 CAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTT 29770 || |||| | || || || |||| || || || || |||||||| ||||| | ||| | Sbjct 647 CATTTTCAATGGTATCTGATGGTTCAACCTCTAGGGTAATAGTTTTCCCAGTGAGGGTCT 588 Query 29771 TAACAAATATCTGCAT 29786 | ||||| |||||||| Sbjct 587 TGACAAAAATCTGCAT 572 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| ||| || ||||| || || || |||||||| |||||||||||||| | Sbjct 107 CCACCTCTCAGACGAAGGACCAAGTGCAGTGTTGATTCTTTCTGAATGTTATAATCTGAC 166 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCA 29652 | |||||| ||| || ||||||||||||||| Sbjct 167 AAGGTGCGGCCATCTTCAAGTTGTTTGCCAGCA 199 >seq642 Length=496311 Score = 95.1 bits (104), Expect = 9e-15 Identities = 89/111 (80%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 29682 ACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTT 29740 ||| ||||||||||| |||||| | ||||||| |||| | || |||||| |||| || | Sbjct 67024 ACCTTCTTTGTCTTG-AATTTTAGCTTTGACATTTTCAATGGTATCAGAAGGTTCAACCT 67082 Query 29741 CAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAA 29791 | || || ||||| ||||| |||| |||||| || || |||||||| |||| Sbjct 67083 CTAGGGTGATAGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCATCTTAA 67133 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383663319032541