Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Biomphalaria_20glabrata_20[refseq_20GCF_5F000457365.1_202013-09-06] 331,401 sequences; 916,388,084 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq14293 150 2e-31 seq168112 107 3e-18 >seq14293 Length=520737 Score = 150 bits (166), Expect = 2e-31 Identities = 171/227 (75%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| || ||||||||||| | | ||||| ||||| || || ||||| || | | Sbjct 326125 TCAAATTCTTCACCCCAAACATCGGCAAGCCCAGGACATTCGTTAGGACACATTAAAGTC 326184 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 ||||| ||| |||| ||| || ||| ||||| ||||| ||||| || || || Sbjct 326185 CAGTCGGCATTCTCCTCAACACGGCGCATGAAGAGGTCAGGAATCCACAGGGCGTAGAAA 326244 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTT-TTTAAGATCGAGAAACTCCAT 78103 ||||| | || || |||||||| || || ||||| || |||||| ||||||||||| | Sbjct 326245 AGATCCCTGGCTCGTTGTTCTTCTTTACCAGTATTTTTCTTTAAG-TCGAGAAACTCAAA 326303 Query 78104 AATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTC 78150 || ||| | |||||||||||||| ||| || || | | |||| |||| Sbjct 326304 AACATCTGCATGCCATGGTTCTAAATAGATAGCAAAAGCTCCTGGTC 326350 Score = 102 bits (112), Expect = 1e-16 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 77109 AGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTG 77168 |||||| |||| || || || || ||||| ||||| || | | || |||||||| ||| Sbjct 324721 AGATGATGATTGACAATCTGGAACTCTCCCGACAAAACACGCCTAGAATAAATATTGCTG 324780 Query 77169 GTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATA 77228 || || | || | || || |||||||| | |||||||||||| || || || ||||| Sbjct 324781 GTGTAAGCCTCTATGGACTCGTTGTTTCCAAGAATTTGAGCAGTTGAGGCTGTAGGCATT 324840 Query 77229 GGTGCCACCAATAAACTATTTCTGAGACCAT 77259 || |||| || | ||| ||||||| ||||| Sbjct 324841 GGAGCCATCAGCAGACTGTTTCTGACACCAT 324871 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 78736 TTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAG 78795 ||| | | || || | ||| || | || ||||||| |||||| ||||| |||| || | Sbjct 329139 TTATACCGCTGAAGACTTTCTTGCTCTCTTTGTGTAAATTAGAAACAGCGATTCGCGCGG 329198 Query 78796 CTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAA 78855 | || ||||||||||| ||||||| ||||| ||| |||||| ||||||| || ||| Sbjct 329199 CCAGGATAGCATAATCTGGATGTTTCGTAGTCATAGTCGCTGCTGTTTCTGCTGCCAAAT 329258 Query 78856 TATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTT 78904 | || | ||| | |||||| || || | || | ||| | || ||||| Sbjct 329259 TGTCGAGCTCAACAGTTGTTACACCTTGGTACAATCCATTGATGACTTT 329307 Score = 86.0 bits (94), Expect = 9e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| | || |||| ||||| | || || || |||| || |||||||| | | Sbjct 405633 TCAAATTCTTGACCAAAAACCTCATCAAGCCCTGGACACTCATAAGGACACATCAAAGTC 405692 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || ||| |||| | | ||||| ||| ||||| ||||| | ||| || ||| Sbjct 405693 CAATCATCATCGGCTTCGACTCGACGCATGAAGAGGTCAGGAACCCAAAGTGCATAGGCC 405752 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 |||| | ||| |||||| || || ||||| || || | || | |||||| | | Sbjct 405753 AGATTCTTTGCTCTCATTTCTTCTTTGCCAGTATTTTTCTTTAACTCCAAAAACTCAAAA 405812 Query 78105 ATATCAGAATGCCATGGTTCTA 78126 || |||| |||||||||||||| Sbjct 405813 ATGTCAGGATGCCATGGTTCTA 405834 >seq168112 Length=81752 Score = 107 bits (118), Expect = 3e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47946 TTTTTAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATC 48005 |||| | ||||||||||| | |||||| || || || ||||| |||||| | ||||| Sbjct 34794 TTTTCACATCCTAATTCTACCAGCAGTCTGTCGGCCACAAATTCAATATATTTCCTCATC 34735 Query 48006 ATTTCACAATTCATTCCTATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCG 48065 | |||||| |||||||| || | || || |||| || || |||||||||||||| || Sbjct 34734 AGTTCACAGTTCATTCCAATCAAATTGACGGGTAAGGCATCTGTAAGAAACTCTTGCTCA 34675 Query 48066 ATAGTGACAGCATC 48079 || || |||||||| Sbjct 34674 ATGGTTACAGCATC 34661 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/224 (69%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| | ||| || | || || |||||| || || ||||||| || || || || Sbjct 34280 TCATCACGACTGATAAGCTCATTGCTAAATGTTAGGCCTGGCATTATGCCCCGCTTCTTC 34221 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 | ||| || || || || || || ||||| || ||||||||||| || || ||||| || Sbjct 34220 AACCAGAAAATGGCAGCAAACGAGCCAGAGAAAAATATGCCTTCCACAGCAGCAAAAGCC 34161 Query 48285 GTAAGTCTCTCTCCGTAACTGGCTTCGTTGT---GTATCCACCGTTGTGCCCAATCAGCC 48341 || ||||| | ||| | ||||| | |||||| ||||||||||| Sbjct 34160 ACAACCCTCTCACTGTATGGGTGTTCGTGATCCCCAATCCACTTCATGGCCCAATCAGCT 34101 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 ||||| | ||||| |||| ||| || || |||||||| | ||| Sbjct 34100 TTCTTTGTAACACAGGGCAGTGTCTCAATGGCATTAAACAAAAA 34057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 691791125812640